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Nucleic atom dist Protein atom
U37:B.N3/1 2.76 GLU19:C.OE1/1
U38:B.N3/1 2.75 ASN16:C.OD1/1
U38:B.O4/1 2.95 LYS80:C.NZ/1
G39:B.O2'/1 2.67 LYS50:C.O/1
G39:B.N7/1 3.46 ASN15:C.OD1/1
G39:B.O6/1 2.98 ASN16:C.N/1
G39:B.N2/1 3.05 GLU19:C.OE2/1
C40:B.O2'/1 3.01 LYS88:C.NZ/1
C40:B.N3/1 3.12 LYS88:C.N/1
C40:B.N4/1 2.94 GLN85:C.NE2/1
C40:B.N4/1 3.11 TYR86:C.O/1
C42:B.O2/1 3.25 ASP92:C.N/1
C42:B.N3/1 2.94 ASP92:C.N/1
C42:B.N4/1 3.04 ASP90:C.O/1
C45:B.OP1/1 2.76 SER46:C.OG/1
G46:B.OP1/1 2.94 LEU49:C.N/1
G46:B.N7/1 3.12 ARG52:C.NH2/1
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Nucleic atom d_n2w water d_p2w Protein atom
A36:B.N6/1 2.84 328:C/1 2.55 GLU19:C.OE1/1
U37:B.O2'/1 2.59 221:C/1 2.5 LEU49:C.O/1
G39:B.O6/1 2.89 273:C/1 2.84 LEU17:C.O/1
G39:B.N3/1 2.91 221:C/1 2.5 LEU49:C.O/1
C40:B.OP2/1 2.86 315:C/1 2.83 TYR13:C.OH/1
C40:B.O2/1 2.82 206:B/1 2.7 THR89:C.OG1/1
A41:B.N7/1 2.65 206:B/1 3.29 THR89:C.N/1
A41:B.N7/1 2.65 206:B/1 2.7 THR89:C.OG1/1
C42:B.O2/1 2.78 340:B/1 2.91 ILE93:C.N/1
G46:B.OP2/1 2.64 251:B/1 3.06 LYS50:C.N/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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