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Nucleic atom dist Protein atom
DT5:I.N3/1 2.71 ARG61:C.O/1
DA9:I.OP1/1 3.28 LYS68:C.NZ/1
DT11:I.OP1/1 2.73 LYS56:C.N/1
DT12:I.OP1/1 2.77 ARG55:C.NH1/1
DT12:I.OP1/1 3 ARG55:C.NH2/1
DG14:I.N3/1 2.9 ARG58:D.NH1/1
DG14:I.N3/1 3.13 ARG58:D.NH2/1
DT15:I.O2/1 3.11 ARG61:D.N/1
DT5:H.N3/1 2.63 ARG61:D.O/1
DT11:H.OP2/1 2.63 LYS56:D.NZ/1
DT11:H.O3'/1 3.15 ARG55:D.NH1/1
DT13:H.OP1/1 3.42 ARG53:D.NH2/1
DG14:H.N3/1 2.87 ARG58:C.NH1/1
DT15:H.O2/1 2.94 ARG61:C.N/1
DT15:H.O2/1 3.23 ARG61:C.O/1
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Nucleic atom d_n2w water d_p2w Protein atom
DT5:I.O4'/1 2.72 101:C/1 2.58 PRO63:C.O/1
DA6:I.N3/1 2.86 29:I/1 3.23 ARG61:C.NE/1
DC8:I.O3'/1 2.88 30:I/1 3.31 ARG61:C.NH2/1
DC8:I.O3'/1 2.88 30:I/1 3.13 LYS68:C.NZ/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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