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Nucleic atom dist Protein atom
DG5:A.N7/1 3.05 ARG430:M.NH1/1
DG5:A.O6/1 3.32 ARG430:M.NH2/1
DG6:A.N7/1 3.22 ARG421:M.NH1/1
DG6:A.O6/1 3.04 ARG421:M.NH2/1
DG7:A.N7/1 3.22 GLN571:M.OE1/1
DG7:A.O6/1 3.12 GLN571:M.NE2/1
DT10:A.OP1/1 2.46 LYS538:L.N/1
DT11:A.OP1/1 2.85 ASN523:L.N/1
DT11:A.OP2/1 2.48 TYR424:L.OH/1
DT11:A.OP2/1 3.21 LYS520:L.NZ/1
DT12:A.OP2/1 2.93 THR426:L.OG1/1
DG4:B.N7/1 2.99 ARG430:L.NH1/1
DG4:B.O6/1 3.04 ARG430:L.NH2/1
DG5:B.OP1/1 2.55 LYS664:L.N/1
DG5:B.OP2/1 2.48 HIS575:L.NE2/1
DG5:B.N7/1 3.28 ARG421:L.NH1/1
DG5:B.O6/1 3.31 ARG421:L.NH1/1
DG5:B.O6/1 3.04 ARG421:L.NH2/1
DA6:B.OP1/1 2.65 LYS666:L.NZ/1
DA6:B.N7/1 2.85 GLN571:L.NE2/1
DA6:B.N6/1 3.03 GLN571:L.OE1/1
DA8:B.O4'/1 3.08 ARG537:M.NH2/1
DA8:B.O3'/1 3.28 LYS538:M.N/1
DG9:B.OP1/1 2.64 LYS538:M.N/1
DT10:B.OP1/1 2.6 ASN523:M.N/1
DT10:B.OP2/1 2.36 TYR424:M.OH/1
DT10:B.OP2/1 2.69 LYS520:M.NZ/1
DC11:B.OP2/1 2.86 THR426:M.OG1/1
DC12:B.N4/1 2.83 GLU427:M.OE1/1
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Nucleic atom d_n2w water d_p2w Protein atom
DT12:A.OP2/1 2.75 23:A/1 3.15 GLU425:L.N/1
DT12:A.OP2/1 2.75 23:A/1 3.03 THR426:L.N/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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