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Nucleic atom dist Protein atom
DT6:D.OP1/1 2.72 LYS254:A.NZ/1
3DR7:D.OP1/1 2.85 ASN171:A.ND2/1
3DR7:D.OP1/1 2.65 TYR238:A.OH/1
3DR7:D.OP2/1 2.87 ARG260:A.NH2/1
DT8:D.OP1/1 2.62 LYS57:A.NZ/1
DT8:D.OP2/1 3.03 ASN171:A.N/1
DT8:D.OP2/1 3.04 ARG260:A.NH2/1
DT9:D.OP1/1 2.9 HIS72:A.NE2/1
DT9:D.OP2/1 3 LYS57:A.NZ/1
DT10:D.OP1/1 2.78 LYS129:A.NZ/1
DC23:E.O2/1 2.9 ARG109:A.NE/1
DC23:E.N3/1 3.1 ARG109:A.NH2/1
DA24:E.OP1/1 3.05 LYS110:A.NZ/1
DA25:E.OP1/1 2.77 LYS90:A.NZ/1
DA25:E.OP1/1 3.23 HIS91:A.NE2/1
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Nucleic atom d_n2w water d_p2w Protein atom
DT5:D.OP2/1 2.98 204:D/1 3.34 LYS256:A.NZ/1
DT6:D.OP2/1 2.64 1082:A/1 2.58 LYS256:A.NZ/1
3DR7:D.OP2/1 2.94 1019:A/1 2.9 ARG260:A.NE/1
3DR7:D.OP2/1 2.94 1019:A/1 2.88 GLY261:A.N/1
3DR7:D.O4'/1 3.08 1127:A/1 2.7 TYR238:A.OH/1
DT8:D.OP2/1 2.93 1157:A/1 2.72 ARG260:A.NH1/1
DT8:D.O4/1 3.25 1046:A/1 2.99 ARG109:A.NH1/1
DT10:D.OP2/1 2.61 1141:A/1 2.48 TYR58:A.OH/1
DT10:D.OP2/1 2.81 117:D/1 2.93 LYS129:A.O/1
DA22:E.N3/1 2.8 165:E/1 3.42 ARG74:A.NH1/1
DC23:E.OP1/1 2.7 182:E/1 2.87 TYR29:A.OH/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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