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Nucleic atom dist Protein atom
G402:B.OP1/1 2.83 GLN348:A.N/1
U403:B.OP1/1 2.69 ARG278:A.NH2/1
U403:B.OP2/1 3.06 LYS264:A.NZ/1
G404:B.OP1/1 3.27 ARG278:A.NE/1
G404:B.OP2/1 3.34 ARG278:A.NE/1
G404:B.OP2/1 3.17 ARG278:A.NH2/1
C406:B.OP2/1 3.11 ARG275:A.NH2/1
U407:B.OP2/1 2.91 ARG275:A.NH1/1
U407:B.OP2/1 2.61 ARG275:A.NH2/1
C408:B.OP2/1 2.91 LYS313:A.NZ/1
U409:B.OP1/1 3.15 HIS269:A.NE2/1
U409:B.OP2/1 2.76 TYR309:A.OH/1
U409:B.OP2/1 2.86 TYR314:A.OH/1
U409:B.O3'/1 2.87 TYR336:A.O/1
U409:B.O2'/1 3 HIS334:A.O/1
U409:B.O2'/1 3 TYR336:A.N/1
G402:C.OP1/1 2.83 GLN348:D.N/1
U403:C.OP1/1 2.69 ARG278:D.NH2/1
U403:C.OP2/1 3.06 LYS264:D.NZ/1
G404:C.OP1/1 3.27 ARG278:D.NE/1
G404:C.OP2/1 3.34 ARG278:D.NE/1
G404:C.OP2/1 3.17 ARG278:D.NH2/1
C406:C.OP2/1 3.11 ARG275:D.NH2/1
U407:C.OP2/1 2.91 ARG275:D.NH1/1
U407:C.OP2/1 2.61 ARG275:D.NH2/1
C408:C.OP2/1 2.91 LYS313:D.NZ/1
U409:C.OP1/1 3.15 HIS269:D.NE2/1
U409:C.OP2/1 2.76 TYR309:D.OH/1
U409:C.OP2/1 2.86 TYR314:D.OH/1
U409:C.O3'/1 2.87 TYR336:D.O/1
U409:C.O2'/1 3 HIS334:D.O/1
U409:C.O2'/1 3 TYR336:D.N/1
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Nucleic atom d_n2w water d_p2w Protein atom
C408:B.O3'/1 3.12 506:A/1 2.73 TYR277:A.OH/1
U409:B.OP1/1 2.96 506:A/1 2.73 TYR277:A.OH/1
C408:C.O3'/1 3.12 506:D/1 2.73 TYR277:D.OH/1
U409:C.OP1/1 2.96 506:D/1 2.73 TYR277:D.OH/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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