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Nucleic atom dist Protein atom
DC1:E.O5'/1 3.16 SER121:A.O/1
DG2:E.OP2/1 2.7 SER121:A.N/1
DG3:E.N7/1 2.81 LYS120:A.NZ/1
DG4:E.O6/1 2.76 LYS120:A.NZ/1
DT7:E.OP2/1 2.96 ARG273:B.NH1/1
DT7:E.OP2/1 3.11 ARG273:B.NH2/1
DT7:E.O5'/1 3.35 ARG273:B.NH2/1
DG8:E.OP1/1 2.49 SER241:B.OG/1
DG8:E.OP2/1 2.8 ALA276:B.N/1
DG8:E.N7/1 2.99 ARG280:B.NH2/1
DG8:E.O6/1 2.72 ARG280:B.NH1/1
DG12:E.OP1/1 3.4 ARG248:A.NH1/1
DG12:E.OP2/1 3.09 ARG248:A.NH2/1
DG2:F.OP1/1 3.05 LYS120:B.N/1
DG3:F.N7/1 2.91 LYS120:B.NZ/1
DG4:F.O6/1 3.03 LYS120:B.NZ/1
DA6:F.O3'/1 3.32 ARG248:A.NH2/1
DT7:F.OP1/1 2.55 ARG248:A.NE/1
DT7:F.OP2/1 2.89 ARG273:A.NH1/1
DT7:F.OP2/1 2.88 ARG273:A.NH2/1
DT7:F.O5'/1 3.2 ARG273:A.NH2/1
DG8:F.OP1/1 2.56 SER241:A.OG/1
DG8:F.OP2/1 2.84 ALA276:A.N/1
DG8:F.N7/1 2.99 ARG280:A.NH2/1
DG8:F.O6/1 2.76 ARG280:A.NH1/1
DG12:F.OP2/1 2.82 THR123:C.N/1
DG12:F.OP2/1 2.91 THR123:C.OG1/1
DG12:F.OP2/1 2.51 THR123:C.OG1/1
DG2:G.OP2/1 2.8 LYS120:D.N/1
DG3:G.N7/1 2.79 LYS120:D.NZ/1
DG3:G.O6/1 2.71 LYS120:D.NZ/1
DG4:G.O6/1 2.5 LYS120:D.NZ/1
DA6:G.O3'/1 3.18 ARG248:C.NH2/1
DT7:G.OP1/1 2.85 ARG248:C.NE/1
DT7:G.OP1/1 3.21 ARG248:C.NH2/1
DT7:G.OP2/1 2.89 ARG273:C.NH1/1
DT7:G.OP2/1 3.02 ARG273:C.NH2/1
DT7:G.O5'/1 3.19 ARG273:C.NH2/1
DG8:G.OP1/1 2.47 SER241:C.OG/1
DG8:G.OP2/1 2.86 ALA276:C.N/1
DG8:G.N7/1 2.93 ARG280:C.NH2/1
DG8:G.O6/1 2.87 ARG280:C.NH1/1
DG12:G.O3'/1 3.26 THR123:A.N/1
DG12:G.O3'/1 2.93 THR123:A.OG1/1
DC1:H.O5'/1 3.4 SER121:C.N/1
DC1:H.O5'/1 2.32 SER121:C.OG/1
DG2:H.OP2/1 2.85 LYS120:C.N/1
DG3:H.N7/1 3.02 LYS120:C.NZ/1
DG3:H.O6/1 2.67 LYS120:C.NZ/1
DG4:H.O6/1 2.69 LYS120:C.NZ/1
DA6:H.O3'/1 3.01 ARG248:D.NH2/1
DT7:H.OP1/1 2.72 ARG248:D.NE/1
DT7:H.OP2/1 2.93 ARG273:D.NH1/1
DT7:H.OP2/1 3.11 ARG273:D.NH2/1
DT7:H.O5'/1 3.39 ARG273:D.NH2/1
DG8:H.OP1/1 2.61 SER241:D.OG/1
DG8:H.OP2/1 2.8 ALA276:D.N/1
DG8:H.N7/1 2.97 ARG280:D.NH2/1
DG8:H.O6/1 2.88 ARG280:D.NH1/1
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Nucleic atom d_n2w water d_p2w Protein atom
DC1:E.O5'/1 2.52 402:E/1 2.97 GLN136:A.OE1/1
DG3:E.OP2/1 2.61 155:E/1 2.99 LYS120:A.NZ/1
DG4:E.N7/1 2.67 152:E/1 2.95 LYS120:A.NZ/1
DG8:E.OP1/1 2.62 141:E/1 3.14 SER241:B.N/1
DG8:E.OP1/1 2.62 141:E/1 2.68 VAL274:B.O/1
DG8:E.OP2/1 2.76 304:B/1 3 CYS277:B.N/1
DG8:E.OP2/1 2.76 304:B/1 2.9 ARG280:B.NH2/1
DG8:E.OP2/1 2.76 304:B/1 2.62 ASP281:B.OD2/1
DC9:E.OP1/1 2.69 842:E/1 3.22 ASN239:B.ND2/1
DC10:E.N4/1 3.12 360:B/1 2.55 SER121:B.OG/1
DC1:F.N3/1 3.31 352:B/1 3.02 ARG280:B.NH1/1
DG4:F.N7/1 2.49 329:F/1 3.11 LYS120:B.NZ/1
DG8:F.OP1/1 2.55 37:F/1 3.19 SER241:A.N/1
DG8:F.OP1/1 2.55 37:F/1 2.78 VAL274:A.O/1
DG8:F.OP2/1 2.67 23:F/1 2.96 CYS277:A.N/1
DG8:F.OP2/1 2.67 23:F/1 2.72 ASP281:A.OD2/1
DC9:F.OP2/1 2.66 788:F/1 2.89 ASN239:A.ND2/1
DG12:F.OP1/1 2.92 406:C/1 3.09 THR123:C.OG1/1
DG12:F.OP1/1 2.92 406:C/1 2.96 CYS124:C.N/1
DG12:F.OP1/1 2.92 406:C/1 2.72 CYS124:C.O/1
DG12:F.O3'/1 2.7 313:C/1 2.57 SER116:C.O/1
DG12:F.O3'/1 2.7 313:C/1 3.26 ALA119:C.N/1
DG2:G.N7/1 2.66 517:G/1 2.82 SER121:D.OG/1
DG8:G.OP1/1 2.56 91:G/1 3.12 SER241:C.N/1
DG8:G.OP1/1 2.56 91:G/1 2.72 VAL274:C.O/1
DG8:G.OP2/1 2.74 312:C/1 2.94 CYS277:C.N/1
DG8:G.OP2/1 2.74 312:C/1 2.9 ARG280:C.NH2/1
DG8:G.OP2/1 2.74 312:C/1 2.68 ASP281:C.OD2/1
DG8:G.N2/1 3.04 370:D/1 2.78 ARG248:D.NH2/1
DG8:G.N3/1 2.96 393:D/1 2.66 ARG248:D.NH1/1
DC9:G.OP2/1 2.77 450:G/1 3.01 ASN239:C.OD1/1
DG12:G.OP1/1 2.79 310:A/1 2.56 THR123:A.OG1/1
DG12:G.OP1/1 2.79 310:A/1 2.63 THR140:A.O/1
DG12:G.OP2/1 2.63 108:G/1 2.65 LYS139:A.NZ/1
DG12:G.OP2/1 2.77 39:G/1 3.01 THR140:A.N/1
DG12:G.O3'/1 2.85 494:G/1 2.95 THR123:A.OG1/1
DG12:G.O3'/1 2.85 494:G/1 3.38 CYS124:A.N/1
DG12:G.O3'/1 2.85 494:G/1 3.01 CYS124:A.O/1
DG12:G.N7/1 2.78 108:G/1 2.65 LYS139:A.NZ/1
DA6:H.O4'/1 2.81 370:D/1 2.78 ARG248:D.NH2/1
DG8:H.OP1/1 2.65 143:H/1 3.19 SER241:D.N/1
DG8:H.OP1/1 2.65 143:H/1 2.82 VAL274:D.O/1
DG8:H.OP2/1 2.81 304:D/1 2.89 CYS277:D.N/1
DG8:H.OP2/1 2.81 304:D/1 2.58 ASP281:D.OD2/1
DC9:H.OP2/1 2.72 471:H/1 3.03 ASN239:D.OD1/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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