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Nucleic atom dist Protein atom
U57:C.O3'/1 3.03 LYS22:B.NZ/1
A1001:C.OP1/1 2.72 LYS22:B.NZ/1
U1006:C.O2/1 3.3 ARG52:B.NE/1
U1006:C.N3/1 2.82 GLU19:B.OE1/1
U1007:C.N3/1 2.99 ASN16:B.ND2/1
U1007:C.O4/1 3.05 ASN16:B.ND2/1
U1007:C.O4/1 2.77 LYS80:B.NZ/1
G1008:C.O2'/1 2.61 LYS50:B.O/1
G1008:C.N7/1 3.35 ASN15:B.ND2/1
G1008:C.O6/1 2.8 ASN16:B.N/1
G1008:C.O6/1 3.27 GLY53:B.O/1
G1008:C.N2/1 2.72 GLU19:B.OE2/1
C1009:C.O2/1 3.38 LYS88:B.N/1
C1009:C.N3/1 3.42 TYR86:B.O/1
C1009:C.N3/1 3.37 LYS88:B.N/1
C1009:C.N4/1 2.82 GLN85:B.OE1/1
C1009:C.N4/1 2.92 TYR86:B.O/1
A1010:C.N6/1 3.2 SER91:B.OG/1
C1011:C.O2/1 3.17 ASP92:B.N/1
C1011:C.N3/1 3.12 ASP92:B.N/1
C1011:C.N4/1 3.11 ASP90:B.O/1
C1014:C.OP1/1 2.81 SER46:B.OG/1
G1015:C.OP1/1 3 LEU49:B.N/1
U57:E.O3'/1 3.51 LYS22:D.NZ/1
A1001:E.OP1/1 2.85 LYS22:D.NZ/1
U1006:E.N3/1 2.9 GLU19:D.OE1/1
U1007:E.N3/1 2.92 ASN16:D.ND2/1
U1007:E.O4/1 2.88 LYS80:D.NZ/1
G1008:E.O2'/1 2.75 LYS50:D.O/1
G1008:E.N7/1 3.11 ASN15:D.ND2/1
G1008:E.O6/1 2.75 ASN16:D.N/1
G1008:E.N2/1 2.81 GLU19:D.OE2/1
A1010:E.N6/1 2.73 SER91:D.OG/1
C1011:E.O2/1 3.25 ASP92:D.N/1
C1011:E.N3/1 3.29 ASP92:D.N/1
G1015:E.OP1/1 2.9 LEU49:D.N/1
G1015:E.OP2/1 3.22 LEU49:D.N/1
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Nucleic atom d_n2w water d_p2w Protein atom
U1006:C.O2'/1 2.61 207:C/1 2.62 LEU49:B.O/1
G1008:C.N3/1 2.76 207:C/1 2.62 LEU49:B.O/1
C1009:C.O2/1 2.51 210:C/1 3 THR89:B.N/1
C1009:C.O2/1 2.51 210:C/1 2.8 THR89:B.OG1/1
A1010:C.N7/1 2.8 210:C/1 3 THR89:B.N/1
A1010:C.N7/1 2.8 210:C/1 2.8 THR89:B.OG1/1
C1009:E.O2/1 2.63 211:E/1 2.75 THR89:D.N/1
C1009:E.O2/1 2.63 211:E/1 2.68 THR89:D.OG1/1
A1010:E.N7/1 2.93 211:E/1 2.75 THR89:D.N/1
A1010:E.N7/1 2.93 211:E/1 3.28 THR89:D.O/1
A1010:E.N7/1 2.93 211:E/1 2.68 THR89:D.OG1/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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