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Nucleic atom dist Protein atom
U1:F.OP1/1 2.63 ASP162:B.OD2/1
U1:F.O5'/1 2.71 HIS61:B.ND1/1
U2:F.OP2/1 2.78 LEU62:B.N/1
U2:F.O2'/1 3.22 ASP96:B.OD1/1
U3:F.OP1/1 2.86 GLY314:B.N/1
U3:F.OP2/1 3.05 ALA224:B.N/1
U4:F.OP1/1 2.8 SER251:B.OG/1
U4:F.OP1/1 3.2 PRO252:B.N/1
U4:F.OP2/1 3.33 MET253:B.N/1
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Nucleic atom d_n2w water d_p2w Protein atom
U4:F.N3/1 3.48 451:B/1 2.71 HIS323:B.NE2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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