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Nucleic atom dist Protein atom
U0:C.O4/1 2.71 ARG678:A.NH1/1
U1:C.O2'/1 3.26 ARG668:A.O/1
G5:C.N7/1 3.09 LYS1378:A.NZ/1
G5:C.O6/1 3.15 PHE1623:A.N/1
G5:C.N2/1 2.98 GLY1636:A.O/1
U6:C.O4/1 3.16 ASN100:L.N/1
U8:C.O2'/1 2.91 GLY129:L.N/1
A45:D.OP2/1 3.34 LYS608:A.NZ/1
G50:D.OP2/1 2.84 HIS1652:A.NE2/1
A51:D.OP1/1 2.78 ALA1651:A.N/1
G52:D.OP2/1 2.61 GLN1647:A.NE2/1
U57:D.OP2/1 2.91 LYS364:I.NZ/1
G60:D.OP2/1 2.79 ALA368:I.O/1
G60:D.OP2/1 2.74 GLY369:I.O/1
G60:D.O3'/1 3 ASN276:K.OD1/1
G60:D.N7/1 3.53 ALA368:I.N/1
G60:D.N7/1 2.71 ALA368:I.O/1
C61:D.OP1/1 2.26 ASN276:K.OD1/1
C61:D.OP2/1 2.66 ARG370:I.N/1
C66:D.OP1/1 2.89 LYS242:K.NZ/1
G71:D.O2'/1 2.79 ASN312:K.ND2/1
G71:D.N2/1 2.78 ASN312:K.OD1/1
U74:D.O2'/1 2.62 ASN66:B.OD1/1
U74:D.O2/1 2.89 ASN66:B.OD1/1
G78:D.OP1/1 2.67 THR112:M.OG1/1
G81:D.OP2/1 2.62 ARG399:K.NH1/1
A82:D.N6/1 2.53 GLU362:K.OE2/1
A83:D.N6/1 2.95 GLU407:K.O/1
C85:D.N4/1 3.11 ARG353:K.NH2/1
G86:D.OP1/1 3.19 MET442:K.O/1
U87:D.O3'/1 3.23 LYS443:K.NZ/1
U110:D.O2/1 2.96 SER65:c.N/1
U8:E.O2/1 2.76 ASN66:B.ND2/1
C10:E.OP2/1 3.23 ARG245:K.NH1/1
C10:E.O2/1 2.85 ARG315:K.NH2/1
A11:E.OP2/1 2.92 ARG249:K.NH2/1
A11:E.N3/1 3.14 HIS308:K.NE2/1
G14:E.OP2/1 2.67 LYS273:K.NZ/1
A16:E.OP2/1 2.8 LYS374:I.NZ/1
A17:E.OP1/1 3.02 LYS436:I.NZ/1
A18:E.OP2/1 2.95 LYS378:I.NZ/1
A18:E.O3'/1 3.04 TYR375:I.OH/1
A20:E.OP1/1 2.75 LYS439:I.N/1
C21:E.OP1/1 2.53 LYS439:I.NZ/1
G22:E.O3'/1 3.35 ARG246:K.NH2/1
U27:E.O3'/1 2.99 LYS343:I.NZ/1
C28:E.OP1/1 3.02 LYS343:I.NZ/1
A29:E.OP1/1 2.9 LYS340:I.NZ/1
G30:E.O6/1 3.02 LYS35:M.NZ/1
U31:E.OP1/1 3.26 ILE98:M.N/1
U31:E.OP2/1 2.5 ALA37:M.N/1
U31:E.N3/1 2.7 GLU59:M.O/1
U31:E.O4/1 3.2 GLU59:M.N/1
G32:E.O6/1 2.79 GLU39:M.N/1
G34:E.OP1/1 2.81 GLN301:I.NE2/1
G34:E.O5'/1 3.07 ARG304:I.NH2/1
G35:E.OP2/1 3.45 LYS300:I.NZ/1
G35:E.OP2/1 3.12 ARG304:I.NH2/1
A36:E.OP2/1 3.15 ARG280:I.NE/1
U37:E.OP2/1 2.27 ARG280:I.NH2/1
U37:E.O4/1 2.48 GLN281:I.NE2/1
C39:E.O2/1 2.54 LYS264:I.NZ/1
G40:E.OP1/1 3.14 LYS266:I.NZ/1
G40:E.N7/1 2.78 LYS791:G.NZ/1
U41:E.O4/1 3.16 SER261:I.OG/1
C42:E.OP2/1 2.51 ASN258:I.ND2/1
C43:E.OP1/1 2.44 ARG46:M.NH1/1
G44:E.OP2/1 3.31 LYS34:M.NZ/1
G44:E.O2'/1 3.19 GLU39:M.OE1/1
G44:E.N7/1 3.29 LYS42:M.NZ/1
G44:E.O6/1 2.47 LYS42:M.NZ/1
G50:E.OP2/1 2.88 ARG136:G.NH2/1
U51:E.OP1/1 2.97 SER351:I.OG/1
U51:E.OP2/1 2.86 ASN132:G.ND2/1
U54:E.N3/1 3.33 GLN140:G.NE2/1
U54:E.O4/1 3.42 GLN140:G.NE2/1
U55:E.OP2/1 2.84 ARG143:G.NH1/1
U55:E.O4'/1 3.09 LYS144:G.NZ/1
U55:E.O2/1 2.78 PHE1587:A.O/1
G58:E.OP1/1 3.07 LYS365:I.NZ/1
G58:E.N7/1 2.52 ARG367:I.NH2/1
G58:E.O6/1 3.14 ARG367:I.NH2/1
U147:E.O2/1 2.94 GLY89:O.N/1
U148:E.O2/1 2.89 GLN35:P.O/1
U148:E.O4/1 3.15 LYS39:O.O/1
G150:E.N7/1 3.4 ASP99:Q.O/1
G32:F.OP1/1 2.53 ASN294:A.ND2/1
U33:F.O4/1 2.4 ARG284:A.NH1/1
A45:F.OP1/1 2.39 LYS111:H.NZ/1
C79:F.N4/1 3.02 PRO539:A.O/1
G80:F.OP2/1 2.98 LYS492:A.NZ/1
A82:F.OP2/1 3.36 LYS503:A.NZ/1
C83:F.OP1/1 3.25 ARG709:A.NH2/1
C83:F.OP2/1 2.7 LYS503:A.NZ/1
C83:F.O3'/1 2.93 ASN532:A.OD1/1
C83:F.O3'/1 2.49 ASN532:A.ND2/1
U85:F.OP1/1 3.14 GLN676:A.NE2/1
G86:F.OP2/1 3.1 LYS672:A.NZ/1
C95:F.N4/1 2.91 LYS1378:A.O/1
U97:F.O2'/1 2.65 HIS139:L.O/1
U99:F.O2'/1 2.46 ASN617:A.ND2/1
A100:F.OP1/1 2.96 ASN617:A.ND2/1
A100:F.O3'/1 3 TYR671:A.N/1
A100:F.O2'/1 2.95 TYR671:A.N/1
C101:F.O5'/1 3.22 LYS672:A.N/1
C102:F.OP1/1 2.71 HIS675:A.NE2/1
G104:F.OP1/1 3.24 GLU353:A.N/1
G104:F.O3'/1 3.11 LYS340:A.NZ/1
A105:F.OP1/1 3.17 LYS340:A.NZ/1
A105:F.OP1/1 2.52 HIS535:A.NE2/1
C111:F.O2'/1 2.98 ARG716:A.O/1
C111:F.O2/1 3.03 ARG716:A.NE/1
C111:F.N3/1 3.51 ARG716:A.NH2/1
C112:F.O2'/1 3.27 ARG495:A.NH1/1
G113:F.OP1/1 3.21 LYS174:A.NZ/1
U171:F.O2/1 2.97 GLY89:S.N/1
U172:F.O4/1 3.1 LYS39:S.O/1
G174:F.N7/1 3.2 ASP99:U.O/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2020

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