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Nucleic atom dist Protein atom
U1:B.O2'/1 2.78 ALA338:A.O/1
U2:B.OP1/1 2.78 LYS340:A.N/1
U2:B.O2/1 3.04 GLN247:A.NE2/1
U3:B.OP1/1 2.73 GLY362:A.N/1
U3:B.OP1/1 2.77 THR387:A.OG1/1
U3:B.OP2/1 2.97 LYS340:A.NZ/1
U3:B.O2'/1 2.72 PRO170:A.O/1
U3:B.N3/1 2.83 GLN248:A.O/1
U4:B.OP1/1 2.96 ARG172:A.N/1
U4:B.OP1/1 2.86 ARG369:A.NH2/1
U4:B.OP2/1 3.06 ARG369:A.NH1/1
U4:B.O2'/1 2.99 GLY217:A.N/1
U4:B.O2'/1 2.5 GLN253:A.OE1/1
U4:B.O2/1 3.21 GLN253:A.NE2/1
U5:B.OP1/1 2.68 THR215:A.OG1/1
U5:B.OP1/1 2.92 THR218:A.N/1
U5:B.OP1/1 2.64 THR218:A.OG1/1
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Nucleic atom d_n2w water d_p2w Protein atom
U1:B.N3/1 3.15 1319:A/1 2.91 THR409:A.O/1
U2:B.OP1/1 2.69 1055:B/1 2.97 LYS341:A.N/1
U2:B.OP2/1 2.73 1489:B/1 3.02 LYS340:A.NZ/1
U3:B.O2'/1 2.81 1498:B/1 2.83 ASN243:A.ND2/1
U3:B.O2'/1 2.81 1498:B/1 3.15 GLN247:A.NE2/1
U5:B.O3'/1 3.04 1288:A/1 2.75 THR218:A.OG1/1
U5:B.O2'/1 2.79 1288:A/1 2.75 THR218:A.OG1/1
U6:B.OP1/1 2.83 1499:B/1 2.96 ASP199:A.OD2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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