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Nucleic atom dist Protein atom
DA1003:G.OP1/1 3.06 LYS106:C.NZ/1
DG1004:G.N7/1 3.19 ARG81:C.NH1/1
DG1004:G.O6/1 2.98 ARG81:C.NH2/1
DT1007:G.OP1/1 3.16 ARG38:B.NE/1
DT1007:G.OP1/1 2.56 ARG38:B.NH2/1
DA1008:G.OP2/1 3 GLN83:B.N/1
DA1008:G.N7/1 3.2 GLN83:B.OE1/1
DA1008:G.N7/1 3.08 LYS88:B.NZ/1
DA1008:G.N6/1 3.11 GLN83:B.OE1/1
DG1009:G.OP2/1 2.8 LEU78:B.N/1
DG1009:G.O6/1 3.04 LYS88:B.NZ/1
DA2003:H.OP2/1 2.63 LYS106:B.NZ/1
DG2004:H.N7/1 3.23 ARG81:B.NH1/1
DG2004:H.O6/1 3.07 ARG81:B.NH2/1
DA2008:H.OP2/1 3 GLN83:C.N/1
DA2008:H.N6/1 2.96 GLN83:C.OE1/1
DG2009:H.OP2/1 2.98 LEU78:C.N/1
DG2009:H.N7/1 3.47 LYS88:C.NZ/1
DG2009:H.O6/1 2.87 LYS88:C.NZ/1
DT2012:H.OP1/1 2.73 LYS45:B.NZ/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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