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Nucleic atom dist Protein atom
DC4:T.OP2/1 2.7 ARG331:B.NH2/1
DG6:T.N2/1 3.2 ARG332:B.NH2/1
DA7:T.OP1/1 2.99 ARG247:B.NH1/1
DA7:T.OP1/1 3.14 LYS275:B.NZ/1
DA7:T.OP2/1 2.75 ILE248:B.N/1
DA8:T.OP2/1 3.14 GLY246:B.N/1
DA8:T.OP2/1 3 ARG336:B.NH1/1
DA8:T.OP2/1 2.59 ARG336:B.NH2/1
DA8:T.O5'/1 2.65 ARG336:B.NH2/1
DT9:T.OP1/1 3.13 ARG242:B.NH1/1
DT9:T.OP1/1 2.38 LYS243:B.N/1
DT9:T.OP1/1 3.12 SER244:B.N/1
DT9:T.OP2/1 3.15 SER244:B.OG/1
DC10:T.OP2/1 2.71 LYS243:B.NZ/1
DT12:T.OP2/1 3.12 ALA220:B.N/1
DA7:P.OP2/1 2.93 GLY299:B.N/1
DG8:P.OP2/1 2.89 SER297:B.N/1
DT11:P.OP1/1 2.54 THR190:B.OG1/1
DT11:P.OP2/1 2.97 THR190:B.N/1
DT12:P.OP1/1 2.98 GLY185:B.N/1
DOC13:P.OP2/1 2.86 GLU106:B.OE2/1
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Nucleic atom d_n2w water d_p2w Protein atom
DT12:P.O3'/1 2.95 103:P/1 2.79 GLU106:B.OE1/1
DOC13:P.OP2/1 2.66 103:P/1 2.79 GLU106:B.OE1/1
DOC13:P.OP2/1 2.66 103:P/1 3.17 LYS152:B.NZ/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2021

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