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Nucleic atom dist Protein atom
DC402:C.OP2/1 2.8 LYS34:A.N/1
DC402:C.N4/1 3.41 SER32:A.OG/1
DA403:C.OP1/1 2.87 LYS116:A.NZ/1
DA403:C.N7/1 2.51 TYR33:A.OH/1
DA403:C.N6/1 3.21 TYR33:A.OH/1
DA404:C.OP2/1 2.96 ILE81:A.N/1
DA404:C.N7/1 2.8 GLN38:A.NE2/1
DA404:C.N6/1 3.07 GLN38:A.OE1/1
DA405:C.OP1/1 3.11 GLU80:A.OE2/1
DG408:C.N7/1 2.99 ARG68:A.NH1/1
DG408:C.O6/1 2.91 ARG68:A.NH2/1
DT409:C.O4/1 3.21 ARG70:A.NH1/1
DG413:C.OP1/1 3.03 LYS139:A.NZ/1
DG413:C.OP1/1 3.29 LYS248:B.NZ/1
DA414:C.OP1/1 2.92 GLN247:B.NE2/1
DA414:C.OP2/1 2.72 LYS248:B.N/1
DA414:C.OP2/1 2.78 ARG251:B.NH2/1
DG415:C.N7/1 3.08 ARG270:B.NH2/1
DG415:C.O6/1 2.77 ARG270:B.NH1/1
DA416:C.OP1/1 3.05 ASP337:B.N/1
DA416:C.OP2/1 2.61 SER222:B.OG/1
DA416:C.OP2/1 3.24 LYS298:B.NZ/1
DA416:C.N7/1 2.87 GLN244:B.NE2/1
DC417:C.OP1/1 2.64 SER338:B.OG/1
DC417:C.OP2/1 3.07 ASN336:B.ND2/1
DA418:C.OP1/1 2.78 LYS342:B.N/1
DA418:C.OP1/1 2.78 THR343:B.N/1
DA418:C.OP2/1 3.37 GLN226:B.NE2/1
DA418:C.N7/1 2.71 GLN226:B.NE2/1
DG419:C.O6/1 2.34 LYS228:B.NZ/1
DC502:D.OP2/1 2.64 LYS234:B.N/1
DC502:D.N4/1 3 SER232:B.OG/1
DA503:D.OP1/1 2.91 LYS316:B.NZ/1
DA503:D.N7/1 2.65 TYR233:B.OH/1
DA503:D.N6/1 3.18 TYR233:B.OH/1
DA504:D.OP2/1 2.76 ILE281:B.N/1
DA504:D.N7/1 2.92 GLN238:B.NE2/1
DA504:D.N6/1 3.11 GLN238:B.OE1/1
DG508:D.N7/1 3.24 ARG268:B.NH1/1
DG508:D.O6/1 2.76 ARG268:B.NH2/1
DT509:D.O4/1 3.29 ARG270:B.NH1/1
DA513:D.OP1/1 3.15 LYS339:B.NZ/1
DA513:D.OP2/1 3.04 LYS48:A.NZ/1
5CM514:D.OP1/1 3.1 GLN47:A.NE2/1
5CM514:D.OP2/1 2.97 LYS48:A.N/1
5CM514:D.OP2/1 2.72 ARG51:A.NH2/1
DG515:D.OP2/1 2.98 GLY19:A.O/1
DG515:D.N7/1 3.03 ARG70:A.NH2/1
DG515:D.O6/1 2.57 ARG70:A.NH1/1
DA516:D.OP1/1 2.77 ASP137:A.N/1
DA516:D.OP2/1 2.66 SER22:A.OG/1
DA516:D.OP2/1 3.32 LYS98:A.NZ/1
DA516:D.N7/1 2.89 GLN44:A.NE2/1
DC517:D.OP1/1 2.74 SER138:A.OG/1
DC517:D.OP2/1 3.01 ASN136:A.ND2/1
DG518:D.OP1/1 2.77 LYS142:A.N/1
DG518:D.OP1/1 3.03 THR143:A.N/1
DG518:D.OP2/1 2.95 GLN26:A.NE2/1
DG518:D.N7/1 2.91 GLN26:A.NE2/1
DT519:D.OP1/1 2.93 LYS142:A.NZ/1
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Nucleic atom d_n2w water d_p2w Protein atom
DA403:C.OP2/1 2.79 2020:A/1 2.86 GLN38:A.NE2/1
DA403:C.OP2/1 2.68 2022:A/1 3.18 LEU39:A.N/1
DA403:C.OP2/1 2.79 2020:A/1 2.64 LEU39:A.O/1
DA405:C.OP2/1 2.8 2033:A/1 2.71 TYR66:A.OH/1
DA405:C.OP2/1 2.51 2040:A/1 2.62 SER79:A.N/1
DA405:C.OP2/1 2.51 2040:A/1 2.93 GLU80:A.N/1
DA405:C.N6/1 3.28 2015:A/1 2.78 LYS28:A.NZ/1
DG411:C.N2/1 3.14 2048:A/1 2.74 LYS139:A.NZ/1
DG415:C.OP2/1 2.28 2003:A/1 2.38 ASP20:A.OD1/1
DG415:C.OP2/1 2.28 2003:A/1 2.32 ASP220:B.OD1/1
DG415:C.O3'/1 2.87 2023:B/1 2.91 ASP337:B.OD2/1
DA416:C.OP2/1 2.51 2005:B/1 2.74 ILE223:B.N/1
DA416:C.OP2/1 2.51 2005:B/1 3.29 LYS298:B.NZ/1
DA416:C.OP2/1 2.51 2005:B/1 2.98 ASN336:B.OD1/1
DA416:C.N6/1 3 2014:B/1 2.69 GLN244:B.OE1/1
DA416:C.N6/1 3 2014:B/1 3.18 ARG268:B.NH2/1
DC417:C.N4/1 2.87 2015:B/1 2.89 GLN244:B.OE1/1
DA418:C.N6/1 2.54 2006:B/1 2.92 GLN226:B.OE1/1
DA418:C.N6/1 2.54 2006:B/1 3.14 LYS228:B.NZ/1
DT420:C.O4/1 2.8 2009:B/1 3.24 ASN230:B.ND2/1
DT420:C.O4/1 2.8 2009:B/1 2.62 GLN238:B.OE1/1
DA503:D.OP2/1 3.06 2011:B/1 3.11 GLN238:B.NE2/1
DA504:D.OP1/1 2.64 2022:B/1 3.07 LYS282:B.N/1
DA505:D.OP2/1 2.72 2017:B/1 2.74 TYR266:B.OH/1
DA505:D.OP2/1 2.36 2021:B/1 2.74 SER279:B.N/1
DA505:D.OP2/1 2.36 2021:B/1 2.74 GLU280:B.N/1
5CM514:D.OP1/1 3.17 2005:A/1 2.71 GLN47:A.OE1/1
DG515:D.OP2/1 2.17 2003:A/1 2.38 ASP20:A.OD1/1
DG515:D.OP2/1 2.17 2003:A/1 2.32 ASP220:B.OD1/1
DG515:D.O3'/1 2.73 2045:A/1 2.72 ASP137:A.OD2/1
DG515:D.N2/1 3.02 2048:A/1 2.74 LYS139:A.NZ/1
DG515:D.N3/1 2.69 2048:A/1 2.74 LYS139:A.NZ/1
DA516:D.OP2/1 2.82 2006:A/1 2.78 ILE23:A.N/1
DA516:D.OP2/1 2.82 2006:A/1 3.37 LYS98:A.NZ/1
DA516:D.OP2/1 2.82 2006:A/1 2.8 ASN136:A.OD1/1
DA516:D.O3'/1 2.98 2047:A/1 2.75 LYS139:A.N/1
DA516:D.O3'/1 2.98 2047:A/1 2.85 THR140:A.N/1
DA516:D.N6/1 2.97 2028:A/1 2.77 GLN44:A.OE1/1
DA516:D.N6/1 2.97 2028:A/1 3.27 ARG68:A.NH2/1
DA516:D.N6/1 2.97 2028:A/1 3.01 ASP75:A.OD2/1
DA516:D.N3/1 2.79 2050:A/1 2.74 THR140:A.OG1/1
DC517:D.OP2/1 3.13 2007:A/1 2.89 ALA25:A.N/1
DC517:D.OP2/1 3.13 2007:A/1 2.74 ALA25:A.O/1
DC517:D.O2/1 2.81 2049:A/1 2.69 THR140:A.OG1/1
DG518:D.OP2/1 2.61 2013:A/1 2.87 ILE27:A.N/1
DG518:D.OP2/1 2.61 2013:A/1 3.22 THR143:A.O/1
DG518:D.O6/1 2.82 2009:A/1 2.63 GLN26:A.OE1/1
DG518:D.O6/1 2.82 2009:A/1 3.06 LYS28:A.NZ/1
DT519:D.OP2/1 2.56 2051:A/1 2.37 THR143:A.OG1/1
DT520:D.O4/1 2.78 2018:A/1 3.08 ASN30:A.ND2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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