|
Nucleic atom
|
dist
|
Protein atom
|
|
DG108:B.OP1/1
|
2.85
|
THR506:A.OG1/1
|
|
DG108:B.OP1/1
|
2.94
|
LYS508:A.N/1
|
|
DG108:B.OP1/1
|
2.86
|
THR509:A.N/1
|
|
DG108:B.OP1/1
|
2.96
|
THR509:A.OG1/1
|
|
DG108:B.O3'/1
|
3.1
|
ARG487:A.NE/1
|
|
DC109:B.OP1/1
|
3.26
|
ARG487:A.NE/1
|
|
DC109:B.OP1/1
|
3.12
|
ARG487:A.NH2/1
|
|
DC109:B.OP1/1
|
2.83
|
THR514:A.N/1
|
|
DC109:B.OP1/1
|
2.84
|
THR514:A.OG1/1
|
|
DC109:B.OP2/1
|
2.8
|
SER513:A.OG/1
|
|
DG110:B.OP1/1
|
3.37
|
ARG536:A.NH1/1
|
|
DG110:B.OP2/1
|
2.82
|
ALA516:A.N/1
|
|
DG110:B.N2/1
|
3.12
|
ASN583:A.OD1/1
|
|
DC111:B.O2/1
|
2.62
|
GLN582:A.NE2/1
|
|
DOC112:B.O4'/1
|
2.85
|
GLN582:A.NE2/1
|
|
DOC112:B.OP1/1
|
2.91
|
VAL586:A.N/1
|
|
G4:G.OP1/1
|
2.24
|
ARG677:A.NH1/1
|
|
G4:G.OP2/1
|
2.75
|
SER674:A.N/1
|
|
G4:G.OP2/1
|
2.59
|
SER674:A.OG/1
|
|
G4:G.O3'/1
|
2.9
|
ARG746:A.NE/1
|
|
G4:G.O2'/1
|
2.65
|
TYR671:A.O/1
|
|
G5:G.OP1/1
|
3.32
|
ARG746:A.NH2/1
|
|
G5:G.O2'/1
|
2.88
|
GLN754:A.OE1/1
|
|
G5:G.N3/1
|
2.91
|
GLN754:A.NE2/1
|
|
G6:G.OP1/1
|
2.94
|
ARG728:A.NH1/1
|
|
C7:G.OP1/1
|
2.92
|
ALA570:A.N/1
|
|
G8:G.O2'/1
|
3.07
|
ASN583:A.ND2/1
|
|
C9:G.O2'/1
|
2.83
|
LYS540:A.NZ/1
|
|
|
|
Nucleic atom
|
d_n2w
|
water
|
d_p2w
|
Protein atom
|
|
DC109:B.OP2/1
|
2.73
|
2304:A/1
|
3.25
|
ARG515:A.NE/1
|
|
DG110:B.OP1/1
|
2.56
|
2322:A/1
|
2.83
|
ARG536:A.NH1/1
|
|
DC111:B.OP2/1
|
2.63
|
2324:A/1
|
2.74
|
GLU537:A.OE2/1
|
|
DOC112:B.OP1/1
|
2.8
|
2403:A/1
|
3.36
|
VAL586:A.N/1
|
|
DOC112:B.OP1/1
|
2.8
|
2403:A/1
|
2.95
|
ARG587:A.N/1
|
|
DOC112:B.OP1/1
|
2.8
|
2403:A/1
|
3.29
|
ARG587:A.NH1/1
|
|
G4:G.O5'/1
|
2.57
|
2462:A/1
|
2.89
|
GLY672:A.O/1
|
|
G4:G.N7/1
|
2.55
|
2465:A/1
|
2.64
|
ARG677:A.NH2/1
|
|
G4:G.O6/1
|
2.92
|
2457:A/1
|
2.78
|
THR664:A.O/1
|
|
G5:G.OP1/1
|
2.48
|
2522:A/1
|
2.85
|
ALA743:A.O/1
|
|
G5:G.OP1/1
|
2.48
|
2522:A/1
|
2.79
|
LYS747:A.NZ/1
|
|
G5:G.O2'/1
|
3.05
|
2506:A/1
|
2.83
|
LYS747:A.O/1
|
|
G6:G.OP1/1
|
2.91
|
2507:A/1
|
3.27
|
ARG728:A.NH2/1
|
|
G6:G.O2'/1
|
3.18
|
2373:A/1
|
2.51
|
THR571:A.OG1/1
|
|
G6:G.O2'/1
|
2.9
|
2380:A/1
|
2.43
|
ARG573:A.NH1/1
|
|
G6:G.O2'/1
|
3.18
|
2373:A/1
|
2.87
|
GLN754:A.OE1/1
|
|
G6:G.N3/1
|
2.7
|
2380:A/1
|
2.43
|
ARG573:A.NH1/1
|
|
C7:G.OP1/1
|
2.61
|
2369:A/1
|
2.94
|
ALA568:A.O/1
|
|
C7:G.OP2/1
|
2.76
|
2507:A/1
|
3.27
|
ARG728:A.NH2/1
|
|
C7:G.O2'/1
|
2.91
|
2397:A/1
|
2.83
|
ASN580:A.ND2/1
|
|
C7:G.O2'/1
|
2.91
|
2397:A/1
|
3.13
|
ASN583:A.ND2/1
|
|
G8:G.OP1/1
|
2.92
|
2370:A/1
|
2.75
|
ALA568:A.O/1
|
|
G8:G.O3'/1
|
3.05
|
2398:A/1
|
3.04
|
ASN580:A.ND2/1
|
|
G8:G.O2'/1
|
2.82
|
2398:A/1
|
3.04
|
ASN580:A.ND2/1
|
|
C9:G.O2'/1
|
2.94
|
2327:A/1
|
2.83
|
LYS540:A.NZ/1
|
|
|
Hbonds:
Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
Protein atom is atom of protein in Jmol/RasMol format.
Dist is distance from nucleic atom to protein atom in angstroms (Å).
W-Bridges:
W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
Protein atom is atom of protein in Jmol/RasMol format.
Water is water molecule.
d_n2w is distance from nucleic atom to water molecule (Å).
d_p2w is distance from protein atom to water molecule (Å).
CluD:
CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
Core number is serial number of cluster.
Atoms is number of detected atoms in the cluster.
