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Nucleic atom dist Protein atom
DG108:B.OP1/1 2.85 THR506:A.OG1/1
DG108:B.OP1/1 2.94 LYS508:A.N/1
DG108:B.OP1/1 2.86 THR509:A.N/1
DG108:B.OP1/1 2.96 THR509:A.OG1/1
DG108:B.O3'/1 3.1 ARG487:A.NE/1
DC109:B.OP1/1 3.26 ARG487:A.NE/1
DC109:B.OP1/1 3.12 ARG487:A.NH2/1
DC109:B.OP1/1 2.83 THR514:A.N/1
DC109:B.OP1/1 2.84 THR514:A.OG1/1
DC109:B.OP2/1 2.8 SER513:A.OG/1
DG110:B.OP1/1 3.37 ARG536:A.NH1/1
DG110:B.OP2/1 2.82 ALA516:A.N/1
DG110:B.N2/1 3.12 ASN583:A.OD1/1
DC111:B.O2/1 2.62 GLN582:A.NE2/1
DOC112:B.O4'/1 2.85 GLN582:A.NE2/1
DOC112:B.OP1/1 2.91 VAL586:A.N/1
G4:G.OP1/1 2.24 ARG677:A.NH1/1
G4:G.OP2/1 2.75 SER674:A.N/1
G4:G.OP2/1 2.59 SER674:A.OG/1
G4:G.O3'/1 2.9 ARG746:A.NE/1
G4:G.O2'/1 2.65 TYR671:A.O/1
G5:G.OP1/1 3.32 ARG746:A.NH2/1
G5:G.O2'/1 2.88 GLN754:A.OE1/1
G5:G.N3/1 2.91 GLN754:A.NE2/1
G6:G.OP1/1 2.94 ARG728:A.NH1/1
C7:G.OP1/1 2.92 ALA570:A.N/1
G8:G.O2'/1 3.07 ASN583:A.ND2/1
C9:G.O2'/1 2.83 LYS540:A.NZ/1
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Nucleic atom d_n2w water d_p2w Protein atom
DC109:B.OP2/1 2.73 2304:A/1 3.25 ARG515:A.NE/1
DG110:B.OP1/1 2.56 2322:A/1 2.83 ARG536:A.NH1/1
DC111:B.OP2/1 2.63 2324:A/1 2.74 GLU537:A.OE2/1
DOC112:B.OP1/1 2.8 2403:A/1 3.36 VAL586:A.N/1
DOC112:B.OP1/1 2.8 2403:A/1 2.95 ARG587:A.N/1
DOC112:B.OP1/1 2.8 2403:A/1 3.29 ARG587:A.NH1/1
G4:G.O5'/1 2.57 2462:A/1 2.89 GLY672:A.O/1
G4:G.N7/1 2.55 2465:A/1 2.64 ARG677:A.NH2/1
G4:G.O6/1 2.92 2457:A/1 2.78 THR664:A.O/1
G5:G.OP1/1 2.48 2522:A/1 2.85 ALA743:A.O/1
G5:G.OP1/1 2.48 2522:A/1 2.79 LYS747:A.NZ/1
G5:G.O2'/1 3.05 2506:A/1 2.83 LYS747:A.O/1
G6:G.OP1/1 2.91 2507:A/1 3.27 ARG728:A.NH2/1
G6:G.O2'/1 3.18 2373:A/1 2.51 THR571:A.OG1/1
G6:G.O2'/1 2.9 2380:A/1 2.43 ARG573:A.NH1/1
G6:G.O2'/1 3.18 2373:A/1 2.87 GLN754:A.OE1/1
G6:G.N3/1 2.7 2380:A/1 2.43 ARG573:A.NH1/1
C7:G.OP1/1 2.61 2369:A/1 2.94 ALA568:A.O/1
C7:G.OP2/1 2.76 2507:A/1 3.27 ARG728:A.NH2/1
C7:G.O2'/1 2.91 2397:A/1 2.83 ASN580:A.ND2/1
C7:G.O2'/1 2.91 2397:A/1 3.13 ASN583:A.ND2/1
G8:G.OP1/1 2.92 2370:A/1 2.75 ALA568:A.O/1
G8:G.O3'/1 3.05 2398:A/1 3.04 ASN580:A.ND2/1
G8:G.O2'/1 2.82 2398:A/1 3.04 ASN580:A.ND2/1
C9:G.O2'/1 2.94 2327:A/1 2.83 LYS540:A.NZ/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2020

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