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Nucleic atom dist Protein atom
U109:P.O2'/1 3.18 ARG63:B.NH1/1
U109:P.N3/1 3.34 ASN35:A.OD1/1
U109:P.N3/1 3.01 ASN35:A.ND2/1
U110:P.OP1/1 3.14 ARG63:B.NH2/1
U110:P.O2/1 2.96 SER65:B.N/1
U110:P.N3/1 2.89 ASN37:B.OD1/1
U110:P.O4/1 3.2 ASN37:B.ND2/1
U111:P.O3'/1 3.1 ARG74:D.NH2/1
U111:P.O2'/1 3.26 HIS36:C.ND1/1
U111:P.O2'/1 2.57 ARG74:D.NH2/1
U111:P.N3/1 3.25 ASN38:C.OD1/1
U111:P.N3/1 3.09 ASN38:C.ND2/1
U111:P.O4/1 3.03 ASN38:C.ND2/1
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Nucleic atom d_n2w water d_p2w Protein atom
U111:P.O4'/1 2.56 102:C/1 1.92 ARG69:C.NH1/1
U111:P.O4'/1 2.56 102:C/1 2.42 ASP71:C.OD2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2020

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