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Nucleic atom dist Protein atom
C107:O.N3/1 2.76 ARG72:N.NH2/1
C107:O.N4/1 2.82 ARG72:N.NH1/1
G108:O.N7/1 3.46 ASN37:N.ND2/1
U109:O.O4'/1 3.21 ARG57:H.NH1/1
U109:O.N3/1 3.25 ASN35:H.OD1/1
U110:O.OP1/1 3.29 ARG63:I.NH2/1
U110:O.N3/1 2.89 ASN37:I.OD1/1
U110:O.O4/1 2.74 ASN37:I.ND2/1
U111:O.O3'/1 2.87 ARG74:K.NH2/1
U111:O.O2'/1 2.92 HIS36:J.ND1/1
U111:O.O2'/1 2.85 ARG74:K.NH2/1
U111:O.N3/1 3.1 ASN38:J.OD1/1
U111:O.N3/1 3.16 ASN38:J.ND2/1
U111:O.O4/1 2.9 ASN38:J.ND2/1
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Nucleic atom d_n2w water d_p2w Protein atom
U110:O.O2/1 2.83 102:J/1 3.09 PHE35:I.O/1
U110:O.O2/1 2.83 102:J/1 2.52 ARG69:J.NH1/1
U110:O.O2/1 2.83 102:J/1 2.84 ARG69:J.NH2/1
U111:O.O4'/1 3.1 105:J/1 3.21 ARG69:J.NE/1
U111:O.O4'/1 3.1 105:J/1 2.46 ARG69:J.NH1/1
U111:O.O4'/1 3.1 105:J/1 2.62 ASP71:J.OD2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2020

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