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Nucleic atom dist Protein atom
DT6:B.OP1/1 2.76 LYS254:A.NZ/1
3DR7:B.OP1/1 2.96 ASN171:A.ND2/1
3DR7:B.OP1/1 2.58 TYR238:A.OH/1
3DR7:B.OP2/1 2.96 ARG260:A.NH2/1
DT8:B.OP1/1 2.71 LYS57:A.NZ/1
DT8:B.OP2/1 3 ASN171:A.N/1
DT8:B.OP2/1 2.97 ARG260:A.NH2/1
DT9:B.OP1/1 2.84 HIS72:A.NE2/1
DT9:B.OP2/1 3.1 LYS57:A.NZ/1
DT9:B.O2/1 3.39 ARG74:A.NH1/1
DT10:B.OP1/1 2.89 LYS129:A.NZ/1
DC23:C.O2/1 2.78 ARG109:A.NE/1
DC23:C.N3/1 3.01 ARG109:A.NH2/1
DA24:C.OP1/1 2.85 LYS110:A.NZ/1
DA25:C.OP1/1 2.77 LYS90:A.NZ/1
DA25:C.OP1/1 3.08 HIS91:A.NE2/1
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Nucleic atom d_n2w water d_p2w Protein atom
DT5:B.OP2/1 2.89 121:B/1 3.32 LYS256:A.NZ/1
DT6:B.OP2/1 2.84 584:A/1 2.84 LYS256:A.NZ/1
3DR7:B.OP2/1 2.76 111:B/1 2.99 ARG260:A.NE/1
3DR7:B.OP2/1 2.76 111:B/1 2.98 GLY261:A.N/1
3DR7:B.O4'/1 2.98 678:A/1 2.71 TYR238:A.OH/1
DT8:B.OP2/1 2.83 506:A/1 2.73 ARG260:A.NH1/1
DT8:B.O4/1 3.14 531:A/1 2.92 ARG109:A.NH1/1
DT10:B.OP2/1 2.77 595:A/1 2.61 TYR58:A.OH/1
DT10:B.OP2/1 2.75 127:B/1 2.92 LYS129:A.O/1
DA22:C.N3/1 2.79 103:C/1 3.24 ARG74:A.NH1/1
DC23:C.OP1/1 2.84 127:C/1 2.95 TYR29:A.OH/1
DC23:C.OP1/1 2.84 127:C/1 3.22 ARG31:A.NH2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2020

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