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Nucleic atom dist Protein atom
C9:2.O2'/1 2.37 SER19:l.OG/1
U10:2.O2'/1 2.96 HIS15:l.O/1
A26:2.OP1/1 2.89 HIS15:l.NE2/1
A28:2.OP2/1 2.9 LYS3:l.NZ/1
A123:2.OP1/1 3.25 ARG61:d.NH1/1
A125:2.OP1/1 2.95 ARG61:d.NH1/1
A126:2.OP2/1 2.77 TYR39:f.OH/1
A126:2.N7/1 3.21 GLY38:f.O/1
A126:2.N6/1 3.08 GLY38:f.O/1
U127:2.O4'/1 2.94 ARG63:g.NH2/1
U127:2.O2'/1 2.88 ARG64:a.NH2/1
U127:2.N3/1 2.9 ASN39:g.OD1/1
U127:2.O4/1 2.86 ASN39:g.ND2/1
U128:2.OP1/1 2.76 ASN65:g.OD1/1
U128:2.O4'/1 3.21 ARG64:a.NH2/1
U128:2.O2'/1 3.38 ARG73:b.NH2/1
U128:2.O2/1 2.73 SER66:a.N/1
U128:2.N3/1 2.74 ASN40:a.OD1/1
U128:2.N3/1 3.04 ASN40:a.ND2/1
U128:2.O4/1 2.51 ASN40:a.ND2/1
U129:2.O4'/1 3.49 ARG73:b.NH2/1
U129:2.O3'/1 3.05 ARG61:c.NH1/1
U129:2.O2'/1 2.64 HIS37:b.ND1/1
U129:2.O2'/1 2.83 ARG61:c.NH1/1
U129:2.N3/1 2.93 ASN39:b.OD1/1
U129:2.N3/1 3.06 ASN39:b.ND2/1
U129:2.O4/1 2.65 ASN39:b.ND2/1
G130:2.OP1/1 2.6 ARG61:c.NH2/1
U131:2.O4'/1 3 ARG102:d.NH1/1
U131:2.O2'/1 2.92 HIS62:d.ND1/1
U131:2.O2'/1 3.18 ARG65:f.NH1/1
U131:2.O2'/1 3.15 ARG65:f.NH2/1
U131:2.O2/1 2.89 ASP104:d.N/1
U131:2.N3/1 2.97 ASN64:d.OD1/1
U131:2.N3/1 3.07 ASN64:d.ND2/1
U131:2.O4/1 2.69 ASN64:d.ND2/1
G132:2.O6/1 2.42 ARG66:c.NH1/1
G133:2.OP1/1 2.88 LYS24:f.NZ/1
G133:2.OP2/1 2.89 ARG47:d.NH1/1
G133:2.OP2/1 2.81 ASN67:f.ND2/1
G133:2.O5'/1 2.96 ARG47:d.NH2/1
A135:2.O2'/1 2.59 LYS20:c.O/1
A135:2.O2'/1 3.38 ARG66:c.NH1/1
A135:2.N6/1 2.8 GLN36:k.O/1
G136:2.N7/1 2.55 ARG66:c.NH2/1
G136:2.O6/1 2.56 ARG66:c.NH2/1
G136:2.O6/1 3.23 ASN48:d.ND2/1
G136:2.N2/1 2.76 GLU18:c.OE1/1
G136:2.N2/1 3.56 LYS50:d.NZ/1
U137:2.O3'/1 3.02 GLN36:k.NE2/1
G138:2.OP1/1 3.11 ASN35:k.OD1/1
G138:2.OP2/1 2.81 GLN36:k.NE2/1
A1:x.N3/1 3.12 THR14:l.OG1/1
G2:x.O2'/1 2.93 TYR12:l.O/1
A5:x.OP1/1 2.62 ARG28:l.N/1
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Nucleic atom d_n2w water d_p2w Protein atom
G136:2.N2/1 3.09 102:c/1 2.58 GLU18:c.OE1/1
G136:2.N2/1 3.09 102:c/1 2.32 TYR67:c.OH/1
G136:2.N2/1 3.09 102:c/1 2.9 LYS50:d.NZ/1
G136:2.N2/1 3.09 102:c/1 2.92 GLU72:d.OE2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2020

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