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Nucleic atom dist Protein atom
C9:3.O2'/1 2.65 SER19:M.OG/1
U10:3.O3'/1 2.9 SER17:M.OG/1
U10:3.O2'/1 3 HIS15:M.O/1
U10:3.O2'/1 2.7 SER17:M.OG/1
A28:3.OP2/1 2.55 LYS3:M.NZ/1
A123:3.OP1/1 3.29 ARG61:R.NH1/1
A123:3.O2'/1 2.74 GLU10:R.OE1/1
A125:3.OP1/1 2.82 ARG61:R.NH1/1
A126:3.OP2/1 2.64 TYR39:T.OH/1
A126:3.N7/1 3.27 GLY38:T.O/1
A126:3.N6/1 3.09 GLY38:T.O/1
U127:3.O2'/1 2.93 ARG64:O.NH2/1
U127:3.O2/1 3.01 GLY64:U.N/1
U127:3.N3/1 3.04 ASN39:U.OD1/1
U127:3.O4/1 3.06 ASN39:U.ND2/1
U128:3.O2/1 3.06 SER66:O.N/1
U128:3.O2/1 2.94 SER66:O.OG/1
U128:3.N3/1 3.05 ASN40:O.OD1/1
U128:3.N3/1 3.12 ASN40:O.ND2/1
U128:3.O4/1 3 ASN40:O.ND2/1
U129:3.O4'/1 3.32 ARG73:P.NH2/1
U129:3.O3'/1 3.16 ARG61:Q.NH1/1
U129:3.O2'/1 2.65 HIS37:P.ND1/1
U129:3.O2'/1 2.92 ARG61:Q.NH1/1
U129:3.N3/1 3.1 ASN39:P.OD1/1
U129:3.N3/1 3.19 ASN39:P.ND2/1
U129:3.O4/1 2.9 ASN39:P.ND2/1
G130:3.OP1/1 2.68 ARG61:Q.NH2/1
U131:3.O4'/1 2.9 ARG102:R.NH1/1
U131:3.O2'/1 2.78 HIS62:R.ND1/1
U131:3.O2'/1 3.35 ARG65:T.NH2/1
U131:3.N3/1 3.13 ASN64:R.OD1/1
U131:3.N3/1 3.04 ASN64:R.ND2/1
U131:3.O4/1 2.9 ASN64:R.ND2/1
G132:3.O6/1 2.34 ARG66:Q.NH1/1
G133:3.OP1/1 2.88 LYS24:T.NZ/1
G133:3.OP2/1 3.14 ARG47:R.NH2/1
G133:3.OP2/1 2.63 ASN67:T.ND2/1
G133:3.O5'/1 2.72 ARG47:R.NH2/1
G133:3.O2'/1 3.14 GLU37:S.OE1/1
A135:3.OP1/1 2.98 LYS32:N.NZ/1
A135:3.O2'/1 2.64 LYS20:Q.O/1
A135:3.O2'/1 3.36 ARG66:Q.NH1/1
A135:3.N6/1 2.85 GLN36:N.O/1
G136:3.N7/1 2.68 ARG66:Q.NH2/1
G136:3.O6/1 2.54 ARG66:Q.NH2/1
G136:3.O6/1 3.34 ASN48:R.ND2/1
G136:3.N2/1 3.09 GLU18:Q.OE1/1
A1:Y.O2'/1 2.94 THR14:M.OG1/1
G2:Y.O2'/1 2.64 TYR12:M.O/1
G2:Y.O2'/1 3.39 THR14:M.N/1
G3:Y.O3'/1 3.02 HIS24:M.ND1/1
A5:Y.OP1/1 2.69 ARG28:M.N/1
A6:Y.OP1/1 2.4 ARG28:M.NH2/1
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Nucleic atom d_n2w water d_p2w Protein atom
A135:3.N6/1 3.12 302:3/1 2.59 HIS34:N.ND1/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2020

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