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Nucleic atom dist Protein atom
C9:4.O2'/1 2.91 SER19:m.OG/1
U10:4.O3'/1 3.03 SER17:m.OG/1
U10:4.O2'/1 2.98 HIS15:m.O/1
U10:4.O2'/1 2.95 SER17:m.OG/1
C13:4.O2/1 3.05 GLU15:r.OE2/1
C122:4.O2/1 2.91 GLU15:r.OE2/1
A123:4.OP1/1 3.42 ARG61:r.NH2/1
U124:4.OP2/1 3.03 GLU10:r.OE2/1
A125:4.OP1/1 2.7 ARG61:r.NH2/1
A126:4.OP2/1 2.7 TYR39:t.OH/1
A126:4.N7/1 3.23 GLY38:t.O/1
A126:4.N6/1 3.14 GLY38:t.O/1
U127:4.O4'/1 3.02 ARG63:u.NH2/1
U127:4.O2'/1 2.82 ARG64:o.NH2/1
U127:4.O2/1 2.89 ASN65:u.N/1
U127:4.N3/1 3.09 ASN39:u.OD1/1
U127:4.O4/1 3.25 ASN39:u.ND2/1
U128:4.OP1/1 2.94 ASN65:u.OD1/1
U128:4.O4'/1 3.35 ARG64:o.NH2/1
U128:4.O2/1 2.93 SER66:o.N/1
U128:4.N3/1 2.97 ASN40:o.OD1/1
U128:4.N3/1 3.07 ASN40:o.ND2/1
U128:4.O4/1 2.85 ASN40:o.ND2/1
U129:4.O4'/1 3.49 ARG73:p.NH2/1
U129:4.O3'/1 3.08 ARG61:q.NH1/1
U129:4.O2'/1 2.6 HIS37:p.ND1/1
U129:4.O2'/1 2.82 ARG61:q.NH1/1
U129:4.N3/1 3.03 ASN39:p.OD1/1
U129:4.N3/1 3.15 ASN39:p.ND2/1
U129:4.O4/1 2.91 ASN39:p.ND2/1
G130:4.OP1/1 2.62 ARG61:q.NH2/1
U131:4.O4'/1 2.74 ARG102:r.NH1/1
U131:4.O2'/1 2.82 HIS62:r.ND1/1
U131:4.O2'/1 3.33 ARG65:t.NH2/1
U131:4.N3/1 3.14 ASN64:r.OD1/1
U131:4.N3/1 3.05 ASN64:r.ND2/1
U131:4.O4/1 2.9 ASN64:r.ND2/1
G132:4.O6/1 2.51 ARG66:q.NH1/1
G133:4.OP1/1 2.99 LYS24:t.NZ/1
G133:4.OP2/1 3.05 ARG47:r.NH1/1
G133:4.OP2/1 2.73 ASN67:t.ND2/1
G133:4.O5'/1 3.05 ARG47:r.NH2/1
A135:4.OP1/1 2.98 LYS32:n.NZ/1
A135:4.O2'/1 2.68 LYS20:q.O/1
A135:4.O2'/1 3.28 ARG66:q.NH1/1
A135:4.N6/1 2.74 GLN36:n.O/1
G136:4.N7/1 2.6 ARG66:q.NH2/1
G136:4.O6/1 2.73 ARG66:q.NH2/1
G136:4.N2/1 2.96 GLU18:q.OE2/1
A5:y.OP1/1 2.69 ARG28:m.N/1
A6:y.OP1/1 2.85 ARG28:m.NH2/1
A6:y.OP2/1 2.78 ARG28:m.NH1/1
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Nucleic atom d_n2w water d_p2w Protein atom
U128:4.O2'/1 2.62 101:p/1 2.59 ASN38:o.O/1
U128:4.O2'/1 2.62 101:p/1 2.44 ARG73:p.NH2/1
U128:4.O2/1 3.06 101:p/1 2.59 ASN38:o.O/1
U128:4.O2/1 3.06 101:p/1 2.44 ARG73:p.NH2/1
U129:4.O4/1 2.46 301:4/1 2.62 ASP37:o.O/1
G130:4.O2'/1 2.77 302:4/1 3.35 ARG102:r.NH2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2020

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