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Nucleic atom dist Protein atom
A1:L.O5'/1 3.21 ILE46:J.O/1
A1:L.N6/1 3.07 TYR142:J.OH/1
U2:L.OP1/1 2.38 ARG48:J.NH1/1
U2:L.O2'/1 2.77 GLY147:J.O/1
U2:L.N3/1 2.78 TYR145:J.O/1
U2:L.O4/1 2.99 TYR145:J.N/1
A3:L.OP1/1 2.48 SER34:J.OG/1
A3:L.OP2/1 3 ARG206:J.NH2/1
A3:L.O5'/1 2.52 ARG206:J.NH2/1
A3:L.O2'/1 2.9 GLN18:J.O/1
A3:L.N6/1 2.98 ARG197:J.O/1
A4:L.OP1/1 3.07 ARG148:J.NE/1
A4:L.OP1/1 2.96 ARG148:J.NH2/1
A4:L.N3/1 2.95 ARG48:J.NH1/1
A5:L.OP1/1 3.05 ARG149:J.N/1
C6:L.OP1/1 3.42 ARG149:J.NE/1
C6:L.O2'/1 2.34 ARG165:I.O/1
C7:L.OP1/1 3.03 ARG49:I.NH1/1
C7:L.OP2/1 3.09 LYS45:I.NZ/1
C7:L.O2'/1 2.73 HIS86:J.NE2/1
C7:L.O2/1 2.54 ARG108:J.NH2/1
C7:L.N3/1 3.01 ARG108:J.NH1/1
G8:L.OP1/1 3.01 LEU89:J.N/1
G8:L.N2/1 2.97 THR87:J.OG1/1
C9:L.OP1/1 3.19 ASN19:I.ND2/1
C9:L.OP2/1 3.05 LYS27:I.NZ/1
C9:L.OP2/1 2.67 GLN42:I.OE1/1
C9:L.OP2/1 3.05 TYR85:J.O/1
C10:L.OP1/1 2.96 ASN19:I.OD1/1
C10:L.OP2/1 2.98 ARG20:I.N/1
U13:L.O3'/1 2.9 THR201:I.O/1
U13:L.O2'/1 2.67 THR201:I.O/1
G14:L.OP1/1 2.87 VAL203:I.N/1
G14:L.OP2/1 2.75 ARG49:H.NH2/1
A15:L.OP1/1 2.72 LYS27:H.NZ/1
A15:L.OP1/1 2.62 SER40:H.OG/1
A15:L.OP2/1 3.02 THR201:I.N/1
A17:L.OP2/1 2.24 ARG20:H.NH1/1
G19:L.O2'/1 2.59 THR201:H.O/1
U20:L.OP1/1 3 VAL203:H.N/1
U20:L.OP2/1 2.47 ARG49:G.NH1/1
G21:L.OP1/1 3.15 ASN19:G.OD1/1
G21:L.OP1/1 2.74 LYS27:G.NZ/1
G21:L.OP1/1 2.65 SER40:G.OG/1
G21:L.OP2/1 3.18 THR201:H.N/1
G21:L.N2/1 3.25 SER211:H.OG/1
G22:L.OP2/1 2.87 ARG20:G.N/1
A23:L.OP2/1 2.37 ARG20:G.NH1/1
U25:L.O2'/1 3.23 THR201:G.O/1
G26:L.OP1/1 3.34 VAL203:G.N/1
C27:L.OP1/1 2.66 LYS27:F.NZ/1
C27:L.OP1/1 2.58 SER40:F.OG/1
C27:L.OP2/1 3.12 THR201:G.N/1
C28:L.OP2/1 2.9 ARG20:F.N/1
A29:L.OP2/1 2.11 ARG20:F.NH1/1
G31:L.O3'/1 2.97 THR201:F.O/1
G31:L.O2'/1 2.76 THR201:F.O/1
U32:L.OP1/1 3.28 VAL203:F.N/1
U32:L.OP2/1 2.95 ARG49:E.NH1/1
G33:L.OP1/1 3.28 ASN19:E.ND2/1
G33:L.OP1/1 2.68 LYS27:E.NZ/1
G33:L.OP1/1 2.35 SER40:E.OG/1
G33:L.OP2/1 3.02 THR201:F.N/1
G33:L.O4'/1 3.01 THR201:F.OG1/1
G33:L.N2/1 2.62 SER211:F.OG/1
G34:L.OP2/1 2.95 ARG20:E.N/1
G35:L.OP2/1 2.15 ARG20:E.NH1/1
U37:L.O3'/1 2.99 THR201:E.O/1
U37:L.O2'/1 3.01 THR201:E.O/1
G38:L.OP1/1 3.3 VAL203:E.N/1
G38:L.OP2/1 3.14 ARG49:D.NH2/1
U39:L.OP1/1 3.13 LYS27:D.NZ/1
U39:L.OP1/1 2.69 SER40:D.OG/1
U39:L.OP1/1 2.71 GLN42:D.NE2/1
U39:L.OP2/1 2.41 THR201:E.OG1/1
U39:L.O5'/1 3.23 ASN19:D.ND2/1
C40:L.OP1/1 3.09 ASN19:D.ND2/1
C40:L.OP2/1 2.98 ARG20:D.N/1
G41:L.N7/1 3.11 ARG20:D.NH2/1
G41:L.O6/1 3.22 ARG20:D.NH1/1
A42:L.N6/1 2.88 ARG20:D.NH1/1
A42:L.N6/1 3.16 ARG20:D.NH2/1
G59:L.OP1/1 2.46 LYS129:K.NZ/1
G61:L.O3'/1 2.86 SER188:K.OG/1
DG6:M.N2/1 2.92 GLN209:E.O/1
DA7:M.N3/1 3.36 SER211:E.N/1
DC8:M.OP1/1 3.4 ASN19:B.ND2/1
DC13:M.O2/1 2.9 SER211:F.N/1
DA14:M.O4'/1 3.27 LEU214:F.N/1
DA14:M.N3/1 2.9 ARG101:B.NH1/1
DG18:M.N3/1 3.41 GLN209:G.O/1
DG19:M.N2/1 2.81 SER211:G.OG/1
DG19:M.N3/1 3.06 SER211:G.N/1
DC20:M.OP1/1 3.22 ASN19:C.ND2/1
DC20:M.O4'/1 3.02 LEU214:G.N/1
DC20:M.O2/1 2.97 LEU214:G.O/1
DA21:M.OP2/1 2.63 ARG26:C.NH2/1
DA21:M.O4'/1 2.91 HIS213:G.NE2/1
DC25:M.O2/1 2.98 SER211:H.N/1
DA26:M.O4'/1 3.28 LEU214:H.N/1
DA30:M.N3/1 2.95 GLN209:I.O/1
DT31:M.O2/1 2.73 SER211:I.N/1
DC32:M.O4'/1 3.25 LEU214:I.N/1
DC32:M.O2/1 3.16 HIS472:A.NE2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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