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Nucleic atom dist Protein atom
A1:B.O2'/1 2.74 SER535:A.OG/1
A1:B.N3/1 2.97 SER535:A.OG/1
A3:B.OP1/1 2.99 VAL383:A.N/1
A4:B.OP1/1 2.66 GLY408:A.N/1
A4:B.OP1/1 2.56 THR433:A.OG1/1
A4:B.O2'/1 2.83 PRO188:A.O/1
A5:B.OP1/1 2.96 ARG190:A.N/1
A5:B.OP1/1 2.82 ARG415:A.NH2/1
A5:B.OP2/1 3.26 ARG415:A.NH1/1
A5:B.O2'/1 3.27 GLY244:A.N/1
A6:B.OP1/1 3.29 GLY220:A.N/1
A6:B.OP1/1 2.68 THR242:A.OG1/1
A6:B.OP1/1 2.71 ARG245:A.N/1
A6:B.OP2/1 2.83 ARG190:A.NE/1
A6:B.O2'/1 3.2 ARG245:A.NE/1
A6:B.O2'/1 2.72 ASP248:A.OD2/1
A6:B.N3/1 3.23 ASP248:A.OD1/1
A7:B.OP2/1 2.86 GLY221:A.N/1
A7:B.O3'/1 2.68 ARG190:A.NH2/1
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Nucleic atom d_n2w water d_p2w Protein atom
A2:B.OP1/1 2.63 101:B/1 3.1 LYS384:A.N/1
A3:B.OP1/1 2.83 101:B/1 3.1 LYS384:A.N/1
A6:B.N3/1 2.55 102:B/1 2.93 GLY244:A.O/1
A6:B.N3/1 2.55 102:B/1 2.9 ASP248:A.OD1/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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