Show specific contacts
Show all contacts
Hide all contacts
[ Download ]

Nucleic atom dist Protein atom
A1:A.OP1/1 3.37 LYS929:B.NZ/1
A4:A.OP1/1 2.53 ARG661:B.NE/1
C5:A.OP1/1 2.29 TYR515:B.OH/1
U6:A.OP2/1 2.89 LYS510:B.NZ/1
A9:A.OP1/1 2.43 LYS890:B.NZ/1
G13:A.OP1/1 2.66 ALA59:B.N/1
U14:A.OP1/1 3.21 ARG66:B.NH1/1
U14:A.OP2/1 2.83 ARG63:B.NE/1
A15:A.OP1/1 2.86 ARG66:B.NE/1
A15:A.OP1/1 2.6 ARG70:B.NH2/1
A15:A.OP2/1 2.89 ARG66:B.NH1/1
A15:A.O2'/1 2.6 TYR450:B.O/1
A16:A.OP1/1 2.96 ARG74:B.NH1/1
A16:A.OP1/1 2.7 ARG74:B.NH2/1
A16:A.OP2/1 2.91 ARG70:B.NE/1
A16:A.OP2/1 2.9 ARG70:B.NH2/1
A16:A.O3'/1 2.98 ILE448:B.O/1
A16:A.O2'/1 2.72 ILE448:B.O/1
A17:A.OP1/1 3.05 ILE448:B.N/1
A17:A.OP2/1 3.05 ARG74:B.NH1/1
A18:A.OP1/1 3.17 ARG165:B.NH1/1
A18:A.OP2/1 3.03 ARG71:B.NH1/1
A18:A.N7/1 3.26 ARG71:B.NH1/1
A18:A.N7/1 3.24 ARG71:B.NH2/1
A19:A.OP1/1 3.1 GLY166:B.N/1
A19:A.O2'/1 3.04 THR404:B.O/1
A20:A.OP1/1 2.87 ASN407:B.ND2/1
A20:A.OP2/1 2.94 ARG403:B.NH1/1
A20:A.O5'/1 2.9 THR404:B.O/1
U22:A.O2'/1 2.59 ILE1110:B.O/1
U23:A.O2/1 2.96 ARG1122:B.NH2/1
U24:A.OP1/1 3 LYS1113:B.N/1
U24:A.O2'/1 2.69 PHE105:B.O/1
A26:A.OP1/1 2.65 ARG115:B.NH1/1
G27:A.OP1/1 2.77 HIS116:B.NE2/1
C40:A.OP1/1 3.38 ARG340:B.NH1/1
A41:A.OP2/1 2.47 ARG340:B.NH2/1
G43:A.O2'/1 2.82 TYR359:B.OH/1
G43:A.N7/1 2.84 LYS336:B.NZ/1
G43:A.N2/1 3.08 ASP364:B.OD2/1
U44:A.O2/1 3.27 GLN402:B.OE1/1
U44:A.N3/1 3.34 TYR325:B.O/1
U45:A.OP1/1 3.02 GLN402:B.N/1
U45:A.OP1/1 2.87 ARG403:B.N/1
U45:A.O2'/1 3.02 ILE135:B.N/1
A46:A.OP1/1 2.86 HIS160:B.NE2/1
A46:A.OP1/1 2.57 ARG403:B.NE/1
A47:A.O2'/1 2.61 LEU101:B.O/1
A47:A.O2'/1 2.92 SER104:B.OG/1
A47:A.N3/1 2.83 SER104:B.OG/1
A48:A.OP2/1 2.77 LYS163:B.NZ/1
A49:A.OP1/1 2.88 LYS76:B.NZ/1
A49:A.N3/1 2.99 ARG1122:B.NH1/1
U50:A.OP1/1 3.13 LYS1123:B.NZ/1
U50:A.O4/1 3.05 ARG75:B.NH1/1
A51:A.N7/1 3.04 PHE1105:B.N/1
A51:A.N6/1 3.21 GLY1103:B.O/1
A52:A.OP1/1 2.8 LYS1123:B.NZ/1
G53:A.OP1/1 2.8 LYS1124:B.N/1
A57:A.OP1/1 2.69 ARG457:B.NH2/1
G58:A.O2'/1 2.59 LEU455:B.O/1
U59:A.OP1/1 2.52 ARG467:B.NH2/1
U59:A.OP1/1 2.92 ILE473:B.N/1
U59:A.OP2/1 2.92 THR472:B.OG1/1
U59:A.O2/1 2.73 ASN77:B.ND2/1
C60:A.OP1/1 2.82 ARG74:B.NH2/1
C60:A.OP1/1 2.94 LEU455:B.N/1
C61:A.OP1/1 2.98 ARG70:B.NH1/1
C61:A.OP1/1 2.69 SER460:B.OG/1
G62:A.OP2/1 3.11 ARG69:B.NH1/1
U63:A.OP2/1 3.07 ARG69:B.NH1/1
U63:A.O2'/1 2.75 THR62:B.OG1/1
U64:A.OP1/1 2.93 THR1102:B.OG1/1
U64:A.O4'/1 3.06 THR62:B.OG1/1
U64:A.O3'/1 3.2 GLU57:B.O/1
U64:A.O2'/1 2.73 GLU57:B.O/1
A65:A.OP1/1 2.79 GLU57:B.N/1
A65:A.O2'/1 2.95 HIS721:B.NE2/1
C67:A.OP1/1 3.02 GLN739:B.NE2/1
C67:A.OP1/1 2.83 LYS742:B.NZ/1
C67:A.OP2/1 2.95 LYS1097:B.NZ/1
C67:A.N3/1 2.96 VAL1100:B.N/1
C67:A.N4/1 2.99 VAL1100:B.O/1
A68:A.O2'/1 2.85 HIS1349:B.ND1/1
G81:A.N2/1 2.93 LYS33:B.O/1
G81:A.N2/1 2.96 GLU1357:B.O/1
DA3:C.OP2/1 3 LYS1334:B.NZ/1
DA5:C.N6/1 3.14 ARG1335:B.NH2/1
DC7:C.O2/1 2.75 LYS1107:B.NZ/1
DC9:C.OP1/1 2.62 GLU1108:B.N/1
DG6:D.OP1/1 2.7 LYS1200:B.NZ/1
DG6:D.OP2/1 2.88 GLN1221:B.NE2/1
DG6:D.N7/1 3.13 ARG1333:B.NH1/1
DG6:D.O6/1 2.63 ARG1333:B.NH2/1
DG7:D.OP1/1 2.72 SER1216:B.OG/1
DG7:D.OP2/1 2.64 SER1216:B.OG/1
DG7:D.N7/1 3.27 ARG1335:B.NH1/1
DG7:D.O6/1 2.3 ARG1335:B.NH2/1
DT8:D.OP1/1 3.03 SER1136:B.N/1
DA9:D.OP1/1 2.64 ARG1114:B.NH1/1
DA9:D.OP1/1 2.6 SER1116:B.OG/1
DA17:E.OP1/1 3.4 GLY658:B.N/1
DA17:E.OP1/1 3 TRP659:B.NE1/1
DA18:E.OP1/1 3.36 ASN497:B.N/1
DA19:E.OP1/1 3.03 ASN497:B.OD1/1
DT20:E.OP1/1 3.09 HIS930:B.NE2/1
DT21:E.OP1/1 2.74 GLN926:B.N/1
DG24:E.N2/1 3.44 ASN588:B.ND2/1
DT28:E.OP1/1 2.93 GLN695:B.NE2/1
Show specific contacts
Show all contacts
Hide all contacts
[ Download ]
Nucleic atom d_n2w water d_p2w Protein atom
A4:A.O2'/1 2.85 3014:A/1 2.91 ASN522:B.ND2/1
A4:A.N3/1 3.1 3014:A/1 2.91 ASN522:B.ND2/1
C5:A.O4'/1 3.17 3014:A/1 2.91 ASN522:B.ND2/1
C5:A.O2'/1 2.69 3018:A/1 2.79 GLU523:B.OE1/1
C5:A.O2/1 2.8 3019:A/1 2.8 ASN588:B.ND2/1
U6:A.OP1/1 2.45 3032:A/1 3.47 LYS510:B.NZ/1
U6:A.O2'/1 2.96 3035:A/1 3.09 ASN588:B.OD1/1
A8:A.O3'/1 2.92 3042:A/1 3.03 GLN894:B.N/1
A8:A.O2'/1 3.01 3042:A/1 3.03 GLN894:B.N/1
A8:A.O2'/1 2.53 3043:A/1 3.07 ARG895:B.N/1
A9:A.O2'/1 3.03 3046:A/1 2.74 ASP853:B.OD2/1
G13:A.OP2/1 2.71 3056:A/1 2.79 ARG63:B.NH1/1
U14:A.OP1/1 2.67 3062:A/1 2.83 ALA59:B.O/1
U14:A.OP1/1 2.67 3062:A/1 3.06 ARG66:B.NH2/1
U14:A.OP1/1 2.56 3057:A/1 3.2 ARG461:B.NH1/1
U14:A.OP2/1 2.94 3056:A/1 2.79 ARG63:B.NH1/1
U14:A.O2'/1 2.65 3064:A/1 2.77 PHE462:B.O/1
U14:A.O2'/1 2.65 3064:A/1 3.15 ARG494:B.NH1/1
U14:A.O2'/1 2.65 3064:A/1 3.13 ARG494:B.NH2/1
A15:A.N7/1 2.8 3066:A/1 2.81 ARG63:B.NH2/1
A15:A.N6/1 3.18 3066:A/1 2.81 ARG63:B.NH2/1
A16:A.OP2/1 2.69 3067:A/1 2.9 THR67:B.O/1
A16:A.O2'/1 2.97 3068:A/1 2.88 TYR450:B.N/1
A16:A.N6/1 3.04 3070:A/1 2.88 THR67:B.OG1/1
A16:A.N3/1 2.85 3071:A/1 2.78 ARG447:B.NH2/1
A17:A.OP1/1 2.63 3074:A/1 3.26 ARG165:B.NH1/1
A17:A.OP1/1 2.63 3074:A/1 3.26 ARG165:B.NH2/1
A17:A.OP1/1 2.63 3074:A/1 3.03 PHE446:B.O/1
A17:A.O2'/1 2.66 3075:A/1 2.89 PHE168:B.N/1
A17:A.N6/1 3.18 3076:A/1 2.88 ARG71:B.NE/1
A17:A.N6/1 3.18 3076:A/1 2.88 ARG71:B.NH2/1
A18:A.OP1/1 2.97 3079:A/1 3.17 ARG78:B.NH1/1
A18:A.OP1/1 2.8 3080:A/1 3.08 ARG165:B.N/1
A18:A.OP2/1 2.95 3078:A/1 3.01 ARG78:B.NH2/1
A18:A.O2'/1 2.89 3081:A/1 2.79 ASN407:B.O/1
A18:A.O2'/1 2.89 3081:A/1 2.68 ILE410:B.O/1
A18:A.N3/1 2.69 3082:A/1 3.19 GLY408:B.O/1
A19:A.OP1/1 2.69 3086:A/1 3.01 HIS415:B.NE2/1
A19:A.OP2/1 2.62 3080:A/1 3.08 ARG165:B.N/1
A20:A.O3'/1 3.06 3094:A/1 2.98 PHE405:B.N/1
A20:A.O2'/1 3.07 3094:A/1 2.98 PHE405:B.N/1
A20:A.N6/1 2.79 3097:A/1 2.66 TYR72:B.OH/1
G21:A.OP1/1 2.59 3099:A/1 2.9 LYS401:B.NZ/1
G21:A.OP1/1 2.75 3095:A/1 2.58 ARG403:B.O/1
U22:A.O2'/1 3.06 3111:A/1 3.11 ILE1110:B.N/1
U24:A.O3'/1 3.03 3118:A/1 2.81 LYS1113:B.NZ/1
U24:A.O3'/1 3.03 3118:A/1 2.7 LYS1130:B.O/1
U25:A.OP1/1 3.15 3118:A/1 2.81 LYS1113:B.NZ/1
U25:A.OP1/1 3.15 3118:A/1 2.7 LYS1130:B.O/1
U25:A.O2'/1 2.81 3122:A/1 2.68 ARG115:B.O/1
A26:A.OP1/1 2.66 3124:A/1 2.65 GLU108:B.OE1/1
A26:A.O2'/1 2.64 3126:A/1 2.56 GLU125:B.OE2/1
A26:A.O2'/1 2.64 3126:A/1 2.86 HIS129:B.NE2/1
G27:A.OP1/1 3.08 3129:A/1 2.67 ARG115:B.NH2/1
G27:A.N2/1 3.08 3136:A/1 3.24 HIS129:B.ND1/1
G27:A.N2/1 3.08 3136:A/1 2.77 PRO133:B.O/1
G43:A.N3/1 3.07 3153:A/1 3.09 ASP364:B.OD1/1
G43:A.N3/1 3.07 3153:A/1 3.16 ASP364:B.OD2/1
U44:A.O2'/1 3.06 3155:A/1 2.67 PRO133:B.O/1
U44:A.O4/1 2.6 3151:A/1 2.57 HIS329:B.ND1/1
U45:A.OP2/1 2.79 3156:A/1 2.99 ARG403:B.O/1
U45:A.O4'/1 3.03 3155:A/1 2.67 PRO133:B.O/1
A46:A.O3'/1 3.14 3163:A/1 2.79 LEU156:B.O/1
A47:A.OP1/1 2.76 3163:A/1 2.79 LEU156:B.O/1
A47:A.OP2/1 2.95 3167:A/1 2.65 LYS163:B.NZ/1
A47:A.OP2/1 2.83 3168:A/1 2.7 ARG403:B.NH2/1
A48:A.OP1/1 2.54 3171:A/1 3.3 LYS76:B.NZ/1
A48:A.OP1/1 2.9 3172:A/1 2.87 GLN83:B.NE2/1
A48:A.OP1/1 2.85 3169:A/1 2.68 TYR155:B.OH/1
A48:A.O2'/1 2.86 3174:A/1 3.1 GLU102:B.OE2/1
A48:A.N7/1 2.9 3167:A/1 2.65 LYS163:B.NZ/1
A49:A.OP2/1 2.85 3178:A/1 2.98 LYS163:B.NZ/1
A49:A.O2'/1 2.82 3180:A/1 2.89 ARG1122:B.O/1
A49:A.N7/1 2.75 3178:A/1 2.98 LYS163:B.NZ/1
U50:A.O4/1 2.69 3191:A/1 2.6 ARG75:B.NH2/1
A51:A.OP1/1 2.77 3192:A/1 2.9 ARG69:B.O/1
A51:A.OP2/1 2.68 3193:A/1 2.89 LYS65:B.O/1
A51:A.O5'/1 2.82 3194:A/1 3.01 ARG69:B.NH2/1
A52:A.OP1/1 2.63 3180:A/1 2.89 ARG1122:B.O/1
A52:A.O2'/1 2.95 3199:A/1 2.98 ALA1121:B.O/1
G53:A.OP2/1 2.71 3206:A/1 2.87 LYS1123:B.NZ/1
A57:A.OP1/1 2.94 3221:A/1 3.08 ARG457:B.O/1
A57:A.OP1/1 2.94 3221:A/1 3.1 ARG457:B.NE/1
G58:A.N3/1 2.84 3225:A/1 2.87 ASN459:B.OD1/1
U59:A.N3/1 2.71 3230:A/1 2.72 ARG74:B.O/1
C60:A.O2'/1 3.08 3233:A/1 2.93 ARG457:B.N/1
C60:A.O2'/1 3.08 3233:A/1 3.2 ASN459:B.N/1
C61:A.O3'/1 3.11 3237:A/1 2.73 ARG461:B.NH1/1
G62:A.OP1/1 2.58 3241:A/1 2.92 ARG66:B.NH2/1
G62:A.OP1/1 2.63 3237:A/1 2.73 ARG461:B.NH1/1
G62:A.N7/1 2.83 3245:A/1 3.07 ARG69:B.NE/1
U63:A.OP2/1 2.81 3246:A/1 2.99 THR62:B.O/1
U63:A.OP2/1 2.82 3241:A/1 2.92 ARG66:B.NH2/1
U63:A.OP2/1 2.81 3246:A/1 2.9 ARG69:B.NH2/1
U63:A.N3/1 2.79 3249:A/1 3.05 GLU1108:B.OE2/1
U63:A.O4/1 2.71 3194:A/1 3.01 ARG69:B.NH2/1
U64:A.OP1/1 2.49 3247:A/1 2.94 GLU57:B.OE1/1
A65:A.OP1/1 2.97 3263:A/1 2.65 SER55:B.O/1
A65:A.OP1/1 2.7 3264:A/1 2.9 LYS735:B.NZ/1
U66:A.OP1/1 2.79 3265:A/1 2.98 LYS734:B.O/1
U66:A.OP1/1 2.55 3270:A/1 2.92 LYS735:B.O/1
U66:A.OP1/1 2.55 3270:A/1 2.92 GLN739:B.NE2/1
U66:A.O2'/1 3.01 3272:A/1 2.64 LYS742:B.NZ/1
C67:A.OP1/1 2.8 3274:A/1 2.75 GLN739:B.OE1/1
A68:A.OP2/1 2.87 3276:A/1 2.82 LYS1097:B.NZ/1
A68:A.OP2/1 2.9 3283:A/1 3.26 THR1098:B.N/1
A68:A.OP2/1 2.87 3276:A/1 2.61 THR1098:B.O/1
A68:A.OP2/1 2.9 3283:A/1 2.8 THR1098:B.OG1/1
A68:A.O2'/1 3.16 3286:A/1 3.09 GLN1350:B.N/1
G81:A.N7/1 2.97 3297:A/1 2.5 LYS749:B.NZ/1
G81:A.O6/1 3.1 3297:A/1 2.5 LYS749:B.NZ/1
DA3:C.OP1/1 2.67 3709:B/1 3.26 ALA1285:B.N/1
DA5:C.N7/1 3.3 3735:B/1 3.21 ARG1335:B.NH2/1
DA5:C.N6/1 3.04 3735:B/1 3.34 ARG1335:B.NE/1
DA5:C.N6/1 3.04 3735:B/1 3.21 ARG1335:B.NH2/1
DC6:C.N4/1 3.01 3732:B/1 3.05 ARG1333:B.NH2/1
DT5:D.OP1/1 2.86 3723:B/1 3.07 ALA1320:B.N/1
DT5:D.OP2/1 3.03 3725:B/1 2.73 PRO1321:B.O/1
DG6:D.OP1/1 2.97 3669:B/1 2.74 GLN1221:B.NE2/1
DG6:D.OP2/1 2.56 3686:B/1 2.94 GLU1219:B.OE2/1
DG6:D.O3'/1 3.15 3627:B/1 2.95 VAL1139:B.N/1
DG7:D.OP1/1 2.96 3625:B/1 2.86 PRO1137:B.O/1
DG7:D.OP1/1 2.82 3627:B/1 2.95 VAL1139:B.N/1
DG7:D.OP1/1 2.9 3682:B/1 2.34 SER1216:B.OG/1
DG7:D.OP1/1 2.9 3682:B/1 2.98 ALA1217:B.N/1
DG7:D.N3/1 2.75 3601:B/1 2.89 LYS1107:B.NZ/1
DG7:D.N3/1 2.75 3601:B/1 2.54 SER1136:B.OG/1
DT8:D.OP1/1 2.58 3613:B/1 2.56 LYS1118:B.O/1
DA9:D.OP2/1 2.47 3614:B/1 2.71 LYS1118:B.NZ/1
DA17:E.OP1/1 2.43 3384:B/1 2.87 THR624:B.O/1
DA18:E.OP1/1 2.79 3406:B/1 2.74 GLY660:B.O/1
DA18:E.OP2/1 2.54 3404:B/1 2.88 TRP659:B.N/1
DT20:E.OP1/1 2.49 3439:B/1 3.14 ALA728:B.N/1
DT20:E.OP1/1 2.7 3441:B/1 2.7 ALA728:B.O/1
DT21:E.OP1/1 2.86 3527:B/1 2.9 ILE927:B.N/1
DG24:E.N3/1 2.76 3361:B/1 3.11 ASN588:B.ND2/1
DT25:E.O2/1 2.84 3019:A/1 2.8 ASN588:B.ND2/1
DT26:E.OP1/1 2.91 3355:B/1 1.96 SER581:B.O/1
DT26:E.O2/1 2.74 3015:A/1 3.21 ASN522:B.ND2/1
DA27:E.OP1/1 2.59 3313:B/1 2.95 LYS526:B.O/1
DA27:E.OP1/1 2.79 3314:B/1 2.75 LYS526:B.NZ/1
[ Download ]
Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2021

text