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Nucleic atom dist Protein atom
U2:A.OP1/1 3.23 GLN926:B.NE2/1
C5:A.OP1/1 2.04 TYR515:B.OH/1
C5:A.OP1/1 3.36 ARG661:B.N/1
U6:A.OP2/1 2.62 LYS510:B.NZ/1
G13:A.OP1/1 2.62 ALA59:B.N/1
U14:A.OP1/1 3.34 ARG66:B.NH2/1
U14:A.OP2/1 3.04 ARG63:B.NH1/1
A15:A.OP1/1 2.71 ARG66:B.NE/1
A15:A.OP1/1 2.44 ARG70:B.NH2/1
A15:A.OP2/1 2.88 ARG66:B.NH2/1
A15:A.O2'/1 2.59 TYR450:B.O/1
A16:A.OP1/1 3.13 ARG74:B.NH1/1
A16:A.OP1/1 2.72 ARG74:B.NH2/1
A16:A.OP2/1 2.92 ARG70:B.NE/1
A16:A.OP2/1 3.2 ARG70:B.NH2/1
A16:A.O3'/1 3 ILE448:B.O/1
A16:A.O2'/1 2.66 ILE448:B.O/1
A16:A.N3/1 3.2 ARG447:B.NH2/1
A17:A.OP1/1 2.99 ILE448:B.N/1
A17:A.OP2/1 2.87 ARG74:B.NH1/1
A18:A.OP1/1 3.15 ARG78:B.NH2/1
A18:A.OP1/1 3.33 ARG165:B.NH1/1
A18:A.OP2/1 2.49 ARG71:B.NH1/1
A19:A.OP1/1 3.02 GLY166:B.N/1
A19:A.O2'/1 2.87 THR404:B.O/1
A19:A.O2'/1 2.85 PHE405:B.O/1
A20:A.OP1/1 2.9 THR404:B.N/1
A20:A.OP1/1 2.96 ASN407:B.ND2/1
A20:A.OP2/1 2.36 ARG403:B.NH1/1
U22:A.O2'/1 2.84 ILE1110:B.O/1
U23:A.O2/1 3.19 ARG1122:B.NH2/1
U24:A.OP1/1 2.95 LYS1113:B.N/1
U24:A.O2'/1 2.69 PHE105:B.O/1
A26:A.OP1/1 2.78 ARG115:B.NH1/1
G27:A.OP1/1 2.7 HIS116:B.NE2/1
A41:A.OP2/1 2.59 ARG340:B.NH2/1
A42:A.N6/1 3.06 PHE351:B.O/1
G43:A.O2'/1 2.83 TYR359:B.OH/1
G43:A.N7/1 3.02 LYS336:B.NZ/1
G43:A.N2/1 3.1 ASP364:B.OD2/1
U44:A.O2'/1 3.22 GLN402:B.NE2/1
U44:A.N3/1 3.46 TYR325:B.O/1
U45:A.OP1/1 2.71 GLN402:B.N/1
U45:A.OP1/1 2.89 ARG403:B.N/1
U45:A.O2'/1 3.05 ILE135:B.N/1
A46:A.OP1/1 3.07 HIS160:B.NE2/1
A46:A.OP1/1 2.72 ARG403:B.NE/1
A47:A.O2'/1 2.53 LEU101:B.O/1
A47:A.N3/1 2.43 SER104:B.OG/1
A49:A.O3'/1 3.27 LYS1123:B.NZ/1
A49:A.N3/1 3.05 ARG1122:B.NH1/1
A49:A.N3/1 3.37 ARG1122:B.NH2/1
U50:A.OP1/1 3.17 LYS1123:B.NZ/1
U50:A.O4/1 3.25 ARG75:B.NH1/1
A51:A.N7/1 2.95 PHE1105:B.N/1
A51:A.N6/1 3.24 GLY1103:B.O/1
A52:A.OP1/1 2.68 LYS1123:B.NZ/1
G53:A.OP1/1 2.72 LYS1124:B.N/1
A57:A.OP1/1 2.8 ARG457:B.NH2/1
G58:A.O2'/1 2.72 LEU455:B.O/1
U59:A.OP1/1 2.32 ARG467:B.NH2/1
U59:A.OP1/1 2.94 ILE473:B.N/1
U59:A.OP2/1 2.9 THR472:B.OG1/1
U59:A.O2/1 2.46 ASN77:B.ND2/1
C60:A.OP1/1 3 ARG74:B.NH2/1
C60:A.OP1/1 2.78 LEU455:B.N/1
C60:A.OP2/1 3.48 ARG74:B.NE/1
C61:A.OP1/1 2.64 ARG70:B.NH1/1
C61:A.OP1/1 2.88 SER460:B.OG/1
C61:A.OP2/1 3.09 ARG70:B.NH1/1
U63:A.OP2/1 2.88 ARG69:B.NH2/1
U63:A.O2'/1 2.76 THR62:B.OG1/1
U64:A.OP1/1 2.77 THR1102:B.OG1/1
U64:A.O4'/1 2.96 THR62:B.OG1/1
U64:A.O3'/1 2.99 GLU57:B.O/1
U64:A.O2'/1 2.66 GLU57:B.O/1
A65:A.OP1/1 2.75 GLU57:B.N/1
C67:A.OP1/1 3.04 GLN739:B.NE2/1
C67:A.OP1/1 2.7 LYS742:B.NZ/1
C67:A.OP2/1 2.58 LYS1097:B.NZ/1
C67:A.N3/1 3.01 VAL1100:B.N/1
C67:A.N4/1 3.01 VAL1100:B.O/1
A68:A.O2'/1 3.21 HIS1349:B.ND1/1
A68:A.N6/1 3.26 SER1351:B.OG/1
U80:A.OP2/1 3.34 ARG753:B.NH2/1
G81:A.N2/1 2.69 LYS33:B.O/1
G81:A.N2/1 3.01 GLU1357:B.O/1
DA3:C.OP2/1 2.93 LYS1334:B.NZ/1
DT9:C.OP1/1 2.64 GLU1108:B.N/1
DT9:C.OP2/1 3.02 SER1109:B.N/1
DT9:C.OP2/1 2.73 SER1109:B.OG/1
DT11:C.OP1/1 2.41 ARG778:B.NH2/1
DA15:C.OP1/1 2.58 ASP269:B.OD2/1
DA17:C.OP1/1 3.22 GLY658:B.N/1
DA18:C.OP1/1 3.32 ASN497:B.N/1
DA19:C.OP1/1 2.91 ASN497:B.ND2/1
DA19:C.OP2/1 3 ARG661:B.NH2/1
DT20:C.OP1/1 3.17 HIS930:B.NE2/1
DT21:C.OP1/1 2.61 GLN926:B.N/1
DG24:C.OP1/1 2.65 LYS902:B.NZ/1
DA27:C.O3'/1 2.95 GLN695:B.NE2/1
DT28:C.OP1/1 2.99 GLN695:B.NE2/1
DG6:D.OP1/1 2.39 LYS1200:B.NZ/1
DG6:D.OP2/1 2.68 GLN1221:B.NE2/1
DG6:D.N7/1 3.03 ARG1333:B.NH1/1
DG6:D.O6/1 2.59 ARG1333:B.NH2/1
DA7:D.OP2/1 2.42 SER1216:B.OG/1
DA7:D.N7/1 3.24 GLN1335:B.NE2/1
DA7:D.N6/1 3.48 ARG1333:B.NH2/1
DA7:D.N6/1 2.83 GLN1335:B.OE1/1
DG8:D.OP2/1 2.49 LYS1118:B.NZ/1
DG8:D.O5'/1 3.24 LYS1118:B.NZ/1
DG8:D.N7/1 2.67 ARG1337:B.NH1/1
DG8:D.O6/1 2.67 ARG1337:B.NH2/1
DA9:D.OP1/1 2.29 ARG1114:B.NH2/1
DA9:D.OP2/1 2.86 ARG1114:B.NH1/1
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Nucleic atom d_n2w water d_p2w Protein atom
C5:A.O2'/1 2.23 3005:A/1 2.74 GLU523:B.OE1/1
U14:A.OP1/1 2.68 3018:A/1 3.08 ALA59:B.O/1
U14:A.OP1/1 2.68 3018:A/1 3.14 ARG66:B.NH1/1
U14:A.O2'/1 2.68 3019:A/1 2.84 PHE462:B.O/1
U14:A.O2'/1 2.68 3019:A/1 3.36 ARG494:B.NH1/1
U14:A.O4/1 2.51 3017:A/1 3.33 ARG63:B.NH2/1
A16:A.O2'/1 3.12 3020:A/1 3.01 TYR450:B.N/1
A17:A.O2'/1 2.95 3022:A/1 3.07 PHE168:B.N/1
A18:A.OP1/1 2.89 3024:A/1 3.25 LYS163:B.O/1
A18:A.OP1/1 2.89 3024:A/1 2.93 ARG165:B.N/1
A19:A.OP2/1 2.57 3024:A/1 3.25 LYS163:B.O/1
A19:A.OP2/1 2.57 3024:A/1 2.93 ARG165:B.N/1
G21:A.OP1/1 2.43 3026:A/1 2.96 LYS401:B.NZ/1
G21:A.OP1/1 2.73 3025:A/1 2.93 ARG403:B.O/1
A26:A.O2'/1 2.88 3037:A/1 2.47 GLU125:B.OE2/1
A26:A.O2'/1 2.88 3037:A/1 2.78 HIS129:B.NE2/1
G27:A.OP1/1 3.01 3038:A/1 2.75 ARG115:B.NH2/1
A41:A.O5'/1 2.96 3039:A/1 3.19 LYS336:B.NZ/1
A42:A.OP2/1 2.39 3039:A/1 3.19 LYS336:B.NZ/1
G43:A.OP2/1 3.01 3042:A/1 2.15 TYR325:B.OH/1
U45:A.OP2/1 2.74 3044:A/1 3.03 ARG403:B.O/1
A46:A.O3'/1 3.18 3046:A/1 2.75 LEU156:B.O/1
A47:A.OP1/1 2.88 3046:A/1 2.75 LEU156:B.O/1
A47:A.OP2/1 2.84 3052:A/1 2.82 LYS163:B.NZ/1
A48:A.OP1/1 3.07 3053:A/1 2.71 LYS76:B.NZ/1
A48:A.N7/1 2.88 3052:A/1 2.82 LYS163:B.NZ/1
A49:A.O2'/1 2.78 3056:A/1 2.89 ARG1122:B.O/1
A49:A.N6/1 3.19 3057:A/1 3.14 LYS163:B.NZ/1
A51:A.O5'/1 3.06 3064:A/1 2.82 ARG69:B.NE/1
A52:A.OP1/1 2.99 3056:A/1 2.89 ARG1122:B.O/1
A57:A.OP1/1 2.9 3073:A/1 3.19 ARG457:B.O/1
A57:A.OP1/1 2.9 3073:A/1 2.8 ARG457:B.NE/1
G58:A.N3/1 2.98 3074:A/1 2.54 ASN459:B.ND2/1
C60:A.O2'/1 2.96 3076:A/1 3.23 ARG457:B.N/1
C60:A.O2'/1 2.96 3076:A/1 3.21 ASN459:B.N/1
G62:A.OP1/1 2.49 3079:A/1 2.98 ARG66:B.NH1/1
U63:A.OP2/1 2.71 3082:A/1 3.14 THR62:B.O/1
U63:A.OP2/1 2.74 3079:A/1 2.98 ARG66:B.NH1/1
U63:A.OP2/1 2.71 3082:A/1 2.1 ARG69:B.NH2/1
U63:A.O4/1 2.7 3064:A/1 2.82 ARG69:B.NE/1
U64:A.OP1/1 2.44 3084:A/1 2.99 GLU57:B.OE1/1
A77:A.OP1/1 2.14 3089:A/1 3.02 LYS742:B.NZ/1
DC5:C.N4/1 3.19 3184:B/1 2.67 GLN1335:B.OE1/1
DT6:C.O4/1 2.71 3181:B/1 3.27 ARG1333:B.NH2/1
DT13:C.O2/1 2.68 3058:B/1 2.68 ARG447:B.NH2/1
DT20:C.OP1/1 2.78 3107:B/1 2.52 ALA728:B.O/1
DA27:C.OP1/1 2.84 3080:B/1 2.86 LYS526:B.NZ/1
DG6:D.OP1/1 3.22 3161:B/1 2.61 GLN1221:B.NE2/1
DG6:D.OP2/1 2.73 3166:B/1 2.46 GLU1219:B.OE2/1
DA7:D.OP1/1 2.96 3150:B/1 2.75 PRO1137:B.O/1
DA7:D.OP1/1 3.13 3151:B/1 3.01 VAL1139:B.N/1
DA7:D.OP1/1 3.07 3165:B/1 3.17 GLY1218:B.N/1
DG8:D.OP1/1 2.72 3148:B/1 2.85 SER1136:B.N/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2021

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