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Nucleic atom dist Protein atom
C5:A.OP1/1 2.28 TYR515:B.OH/1
U6:A.OP2/1 2.77 LYS510:B.NZ/1
G13:A.OP1/1 2.68 ALA59:B.N/1
U14:A.OP1/1 3.33 ARG66:B.NH2/1
A15:A.OP1/1 2.88 ARG66:B.NE/1
A15:A.OP1/1 2.36 ARG70:B.NH2/1
A15:A.OP2/1 2.94 ARG66:B.NH2/1
A15:A.O2'/1 2.64 TYR450:B.O/1
A16:A.OP1/1 3.04 ARG74:B.NH1/1
A16:A.OP1/1 2.63 ARG74:B.NH2/1
A16:A.OP2/1 2.94 ARG70:B.NE/1
A16:A.O3'/1 2.94 ILE448:B.O/1
A16:A.O2'/1 2.66 ILE448:B.O/1
A17:A.OP1/1 2.9 ILE448:B.N/1
A17:A.OP2/1 2.84 ARG74:B.NH1/1
A18:A.OP1/1 3.11 ARG78:B.NH2/1
A18:A.OP1/1 3.04 ARG165:B.NH1/1
A18:A.OP2/1 2.55 ARG71:B.NH1/1
A19:A.OP1/1 2.93 GLY166:B.N/1
A19:A.O2'/1 2.83 THR404:B.O/1
A20:A.OP1/1 2.91 THR404:B.N/1
A20:A.OP1/1 2.83 ASN407:B.ND2/1
A20:A.OP2/1 2.19 ARG403:B.NH1/1
U22:A.O2'/1 2.75 ILE1110:B.O/1
U24:A.OP1/1 2.92 LYS1113:B.N/1
U24:A.O2'/1 2.65 PHE105:B.O/1
U25:A.O2'/1 3.13 LYS111:B.NZ/1
A26:A.OP1/1 2.76 ARG115:B.NH1/1
G27:A.OP1/1 3.37 ARG115:B.NH2/1
G27:A.OP1/1 2.61 HIS116:B.NE2/1
A41:A.OP2/1 3.07 ARG340:B.NH2/1
A42:A.N6/1 3.19 PHE351:B.O/1
G43:A.O2'/1 2.82 TYR359:B.OH/1
G43:A.N7/1 3.15 LYS336:B.NZ/1
G43:A.N2/1 2.92 ASP364:B.OD2/1
U44:A.O2'/1 2.38 GLN402:B.OE1/1
U45:A.OP1/1 2.91 GLN402:B.N/1
U45:A.OP1/1 2.96 ARG403:B.N/1
U45:A.O2'/1 2.96 ILE135:B.N/1
A46:A.OP1/1 2.88 HIS160:B.NE2/1
A46:A.OP1/1 2.56 ARG403:B.NE/1
A47:A.O2'/1 2.41 LEU101:B.O/1
A47:A.O2'/1 2.96 SER104:B.OG/1
A47:A.N3/1 2.59 SER104:B.OG/1
A49:A.O3'/1 3.24 LYS1123:B.NZ/1
A49:A.N3/1 2.94 ARG1122:B.NH1/1
A49:A.N3/1 2.98 ARG1122:B.NH2/1
U50:A.OP1/1 3.19 LYS1123:B.NZ/1
U50:A.O4/1 3.12 ARG75:B.NH1/1
U50:A.O4/1 3.09 ARG75:B.NH2/1
A51:A.N7/1 3.16 PHE1105:B.N/1
A51:A.N6/1 3.29 GLY1103:B.O/1
A52:A.OP1/1 2.76 LYS1123:B.NZ/1
G53:A.OP1/1 2.9 LYS1124:B.N/1
A57:A.OP1/1 2.78 ARG457:B.NH2/1
G58:A.O3'/1 3.14 ARG467:B.NH2/1
G58:A.O2'/1 2.57 LEU455:B.O/1
U59:A.OP1/1 2.37 ARG467:B.NH2/1
U59:A.OP1/1 2.92 ILE473:B.N/1
U59:A.O2/1 2.54 ASN77:B.ND2/1
C60:A.OP1/1 2.81 ARG74:B.NH2/1
C60:A.OP1/1 3.12 LEU455:B.N/1
C61:A.OP1/1 2.63 SER460:B.OG/1
C61:A.OP2/1 2.9 ARG70:B.NH1/1
U63:A.OP2/1 2.96 ARG69:B.NH2/1
U63:A.O2'/1 2.69 THR62:B.OG1/1
U64:A.OP1/1 2.79 THR1102:B.OG1/1
U64:A.O4'/1 3.19 THR62:B.OG1/1
U64:A.O2'/1 2.86 GLU57:B.O/1
A65:A.OP1/1 2.89 GLU57:B.N/1
C67:A.OP1/1 3.04 GLN739:B.NE2/1
C67:A.OP1/1 3.03 LYS742:B.NZ/1
C67:A.OP2/1 2.31 LYS1097:B.NZ/1
C67:A.N3/1 2.97 VAL1100:B.N/1
C67:A.N4/1 3.01 VAL1100:B.O/1
A77:A.OP1/1 2.13 HIS721:B.NE2/1
U80:A.OP2/1 3.02 ARG753:B.NH2/1
G81:A.N2/1 2.85 LYS33:B.O/1
DA8:C.N3/1 2.87 LYS1107:B.NZ/1
DT9:C.OP1/1 2.8 GLU1108:B.N/1
DT9:C.OP2/1 2.98 SER1109:B.N/1
DT9:C.OP2/1 2.72 SER1109:B.OG/1
DT11:C.OP1/1 2.59 ARG778:B.NH2/1
DA17:C.OP1/1 3.42 GLY658:B.N/1
DA17:C.OP1/1 3.19 TRP659:B.NE1/1
DA18:C.OP1/1 3.27 ASN497:B.N/1
DA19:C.OP1/1 2.83 ASN497:B.ND2/1
DT21:C.OP1/1 2.71 GLN926:B.N/1
DG24:C.OP1/1 3.12 LYS902:B.NZ/1
DA27:C.O3'/1 2.99 GLN695:B.NE2/1
DT28:C.OP1/1 2.89 GLN695:B.NE2/1
DG6:D.OP1/1 2.56 LYS1200:B.NZ/1
DG6:D.OP2/1 2.46 GLN1221:B.NE2/1
DG6:D.N7/1 3.21 ARG1333:B.NH1/1
DG6:D.O6/1 2.44 ARG1333:B.NH2/1
DA7:D.OP1/1 2.54 SER1216:B.OG/1
DA7:D.N6/1 3.21 ARG1333:B.NH2/1
DA7:D.N6/1 2.62 GLN1335:B.OE1/1
DG8:D.O3'/1 3.09 ARG1114:B.NH1/1
DG8:D.N7/1 2.62 ARG1337:B.NH2/1
DG8:D.O6/1 2.83 ARG1337:B.NH1/1
DA9:D.OP1/1 2.42 ARG1114:B.NH1/1
DA9:D.OP2/1 3.18 LYS1118:B.NZ/1
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Nucleic atom d_n2w water d_p2w Protein atom
U14:A.OP1/1 2.81 2013:A/1 2.95 ALA59:B.O/1
U14:A.OP1/1 2.81 2013:A/1 3.33 ARG66:B.NH1/1
U14:A.O2'/1 2.96 2014:A/1 2.79 PHE462:B.O/1
U14:A.O2'/1 2.96 2014:A/1 3.15 ARG494:B.NH1/1
A16:A.OP2/1 2.86 2015:A/1 3.11 THR67:B.O/1
A16:A.O2'/1 2.94 2016:A/1 2.91 TYR450:B.N/1
A17:A.OP1/1 2.38 2018:A/1 3.16 ARG165:B.NH1/1
A17:A.O2'/1 2.75 2019:A/1 2.88 PHE168:B.N/1
A26:A.O2'/1 2.78 2030:A/1 2.6 GLU125:B.OE2/1
G27:A.OP1/1 3.07 2032:A/1 2.56 ARG115:B.NH2/1
A42:A.N7/1 2.67 2036:A/1 3.23 TYR347:B.OH/1
A47:A.OP2/1 2.81 2042:A/1 3.11 LYS163:B.NZ/1
A48:A.OP1/1 2.88 2045:A/1 2.83 LYS76:B.NZ/1
A48:A.OP1/1 2.71 2044:A/1 2.8 TYR155:B.OH/1
A48:A.N7/1 2.8 2042:A/1 3.11 LYS163:B.NZ/1
A49:A.O2'/1 2.85 2051:A/1 2.91 ARG1122:B.O/1
A51:A.OP1/1 3.05 2056:A/1 2.76 ARG69:B.O/1
A51:A.OP2/1 2.65 2057:A/1 2.92 LYS65:B.O/1
A51:A.O5'/1 3.05 2058:A/1 2.9 ARG69:B.NE/1
A52:A.OP1/1 2.78 2051:A/1 2.91 ARG1122:B.O/1
G53:A.OP2/1 2.5 2063:A/1 2.95 LYS1123:B.NZ/1
A57:A.OP1/1 2.62 2065:A/1 3.16 ARG457:B.O/1
A57:A.OP1/1 2.62 2065:A/1 3.09 ARG457:B.NE/1
G58:A.N3/1 2.88 2066:A/1 3.24 ASN459:B.ND2/1
C60:A.O2'/1 3.09 2067:A/1 2.77 ARG457:B.N/1
C60:A.O2'/1 3.09 2067:A/1 3.09 ASN459:B.N/1
G62:A.OP1/1 2.53 2070:A/1 2.57 ARG66:B.NH1/1
U63:A.OP2/1 2.51 2071:A/1 2.92 THR62:B.O/1
U63:A.OP2/1 3.04 2070:A/1 2.57 ARG66:B.NH1/1
U63:A.OP2/1 2.51 2071:A/1 2.24 ARG69:B.NH2/1
U63:A.O4/1 2.74 2058:A/1 2.9 ARG69:B.NE/1
C67:A.OP1/1 2.96 2076:A/1 3.11 GLN739:B.OE1/1
A68:A.OP2/1 3.17 2081:A/1 2.65 THR1098:B.OG1/1
A68:A.O5'/1 3.07 2081:A/1 3.08 THR1098:B.N/1
A68:A.O5'/1 3.07 2081:A/1 2.65 THR1098:B.OG1/1
DA18:C.OP2/1 2.74 2059:B/1 3.09 TRP659:B.N/1
DT26:C.O2/1 2.96 2003:A/1 2.93 ASN692:B.ND2/1
DT5:D.OP2/1 2.87 2101:B/1 3.08 PRO1321:B.O/1
DG6:D.O3'/1 3.07 2082:B/1 3.02 VAL1139:B.N/1
DG6:D.N2/1 2.81 2081:B/1 2.94 SER1136:B.OG/1
DG6:D.N3/1 2.89 2081:B/1 2.94 SER1136:B.OG/1
DA7:D.OP1/1 2.88 2082:B/1 3.02 VAL1139:B.N/1
DA7:D.O4'/1 2.74 2081:B/1 2.94 SER1136:B.OG/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2021

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