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Nucleic atom dist Protein atom
C5:A.OP1/1 2.29 TYR515:B.OH/1
U6:A.OP2/1 2.53 LYS510:B.NZ/1
G13:A.OP1/1 2.57 ALA59:B.N/1
U14:A.OP1/1 3.19 ARG66:B.NH2/1
U14:A.OP2/1 3.09 ARG63:B.NH1/1
A15:A.OP1/1 2.93 ARG66:B.NE/1
A15:A.OP1/1 2.4 ARG70:B.NH2/1
A15:A.OP2/1 3.03 ARG66:B.NH2/1
A15:A.O2'/1 2.75 TYR450:B.O/1
A16:A.OP1/1 2.95 ARG74:B.NH1/1
A16:A.OP1/1 2.65 ARG74:B.NH2/1
A16:A.OP2/1 2.85 ARG70:B.NE/1
A16:A.OP2/1 3.23 ARG70:B.NH2/1
A16:A.O3'/1 2.94 ILE448:B.O/1
A16:A.O2'/1 2.7 ILE448:B.O/1
A16:A.N3/1 3.4 ARG447:B.NH2/1
A17:A.OP1/1 2.93 ILE448:B.N/1
A17:A.OP2/1 2.87 ARG74:B.NH1/1
A18:A.OP1/1 3.16 ARG78:B.NH2/1
A18:A.OP1/1 2.94 ARG165:B.NH1/1
A18:A.OP2/1 2.49 ARG71:B.NH1/1
A18:A.N6/1 3.43 ARG71:B.NH2/1
A19:A.OP1/1 2.92 GLY166:B.N/1
A19:A.O2'/1 2.89 THR404:B.O/1
A20:A.OP1/1 2.83 THR404:B.N/1
A20:A.OP1/1 2.91 ASN407:B.ND2/1
A20:A.OP2/1 2.12 ARG403:B.NH1/1
U22:A.O2'/1 2.68 ILE1110:B.O/1
U24:A.OP1/1 3.21 LYS1113:B.N/1
U24:A.O2'/1 2.71 PHE105:B.O/1
U25:A.O2'/1 2.99 LYS111:B.NZ/1
A26:A.OP1/1 2.58 ARG115:B.NH1/1
G27:A.OP1/1 2.75 HIS116:B.NE2/1
A41:A.OP2/1 2.8 ARG340:B.NH2/1
G43:A.O2'/1 2.92 TYR359:B.OH/1
G43:A.N7/1 3.09 LYS336:B.NZ/1
G43:A.N2/1 2.88 ASP364:B.OD2/1
U44:A.O2'/1 3.2 GLN402:B.NE2/1
U44:A.O2/1 2.71 HIS328:B.ND1/1
U45:A.OP1/1 2.83 GLN402:B.N/1
U45:A.OP1/1 3.04 ARG403:B.N/1
U45:A.O2'/1 3.02 ILE135:B.N/1
A46:A.OP1/1 3.03 HIS160:B.NE2/1
A46:A.OP1/1 2.57 ARG403:B.NE/1
A47:A.O2'/1 2.44 LEU101:B.O/1
A47:A.O2'/1 3.06 SER104:B.OG/1
A47:A.N3/1 2.57 SER104:B.OG/1
A48:A.OP2/1 3.05 LYS163:B.NZ/1
A49:A.N3/1 3.25 ARG1122:B.NH1/1
A49:A.N3/1 3.24 ARG1122:B.NH2/1
U50:A.O4/1 3.16 ARG75:B.NH1/1
U50:A.O4/1 3.09 ARG75:B.NH2/1
A51:A.N7/1 3.16 PHE1105:B.N/1
A51:A.N6/1 3.21 GLY1103:B.O/1
A52:A.OP1/1 2.98 LYS1123:B.NZ/1
G53:A.OP1/1 2.82 LYS1124:B.N/1
G53:A.OP2/1 3.22 LYS1123:B.NZ/1
A57:A.OP1/1 2.7 ARG457:B.NH2/1
G58:A.O2'/1 2.59 LEU455:B.O/1
U59:A.OP1/1 2.36 ARG467:B.NH2/1
U59:A.OP1/1 2.98 ILE473:B.N/1
U59:A.O2/1 2.63 ASN77:B.ND2/1
C60:A.OP1/1 2.82 ARG74:B.NH2/1
C60:A.OP1/1 2.98 LEU455:B.N/1
C61:A.OP1/1 2.75 ARG70:B.NH1/1
C61:A.OP1/1 2.52 SER460:B.OG/1
C61:A.OP2/1 2.95 ARG70:B.NH1/1
U63:A.OP2/1 2.77 ARG69:B.NH2/1
U63:A.O2'/1 2.68 THR62:B.OG1/1
U64:A.OP1/1 2.93 THR1102:B.OG1/1
U64:A.O4'/1 3.22 THR62:B.OG1/1
U64:A.O2'/1 2.73 GLU57:B.O/1
A65:A.OP1/1 2.96 GLU57:B.N/1
C67:A.OP1/1 3.02 GLN739:B.NE2/1
C67:A.OP1/1 2.82 LYS742:B.NZ/1
C67:A.OP2/1 2.34 LYS1097:B.NZ/1
C67:A.N3/1 3 VAL1100:B.N/1
C67:A.N4/1 3.06 VAL1100:B.O/1
A68:A.O2'/1 3.07 HIS1349:B.ND1/1
A68:A.N6/1 3.11 SER1351:B.OG/1
A77:A.OP1/1 2.13 HIS721:B.NE2/1
U80:A.OP2/1 2.59 ARG753:B.NH2/1
G81:A.N2/1 3 LYS33:B.O/1
DT9:C.OP1/1 2.64 GLU1108:B.N/1
DT9:C.OP2/1 3.03 SER1109:B.N/1
DT9:C.OP2/1 2.86 SER1109:B.OG/1
DT11:C.OP1/1 2.89 ARG778:B.NH2/1
DA17:C.OP1/1 3.33 GLY658:B.N/1
DA17:C.OP1/1 3.21 TRP659:B.NE1/1
DA18:C.OP1/1 3.32 ASN497:B.N/1
DA19:C.OP1/1 2.82 ASN497:B.ND2/1
DA19:C.OP2/1 3.42 ARG661:B.NH2/1
DT21:C.OP1/1 2.69 GLN926:B.N/1
DG24:C.OP1/1 2.97 LYS902:B.NZ/1
DG24:C.N2/1 3.41 ASN588:B.ND2/1
DA27:C.O3'/1 2.9 GLN695:B.NE2/1
DT28:C.OP1/1 2.92 GLN695:B.NE2/1
DG6:D.OP1/1 2.48 LYS1200:B.NZ/1
DG6:D.OP2/1 2.47 GLN1221:B.NE2/1
DG6:D.N7/1 3.23 ARG1333:B.NH1/1
DG6:D.O6/1 2.51 ARG1333:B.NH2/1
DC7:D.OP1/1 2.23 SER1216:B.OG/1
DG8:D.OP2/1 2.36 ARG1218:B.NH2/1
DG8:D.N7/1 2.89 ARG1337:B.NH2/1
DG8:D.O6/1 2.88 ARG1337:B.NH1/1
DA9:D.OP1/1 2.11 ARG1114:B.NH1/1
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Nucleic atom d_n2w water d_p2w Protein atom
A8:A.O2'/1 2.89 2004:A/1 3.17 GLN894:B.N/1
A9:A.OP1/1 2.12 2004:A/1 3.17 GLN894:B.N/1
U14:A.O2'/1 3.07 2006:A/1 2.68 PHE462:B.O/1
A16:A.O2'/1 3.2 2007:A/1 3.06 TYR450:B.N/1
A17:A.O2'/1 2.8 2008:A/1 2.98 PHE168:B.N/1
G21:A.OP1/1 2.78 2009:A/1 3 LYS401:B.NZ/1
U25:A.O2'/1 2.81 2014:A/1 2.67 ARG115:B.O/1
A26:A.O2'/1 2.91 2016:A/1 2.12 GLU125:B.OE1/1
A26:A.O2'/1 2.91 2016:A/1 2.97 HIS129:B.NE2/1
G27:A.OP1/1 2.96 2018:A/1 2.54 ARG115:B.NH2/1
A47:A.OP2/1 2.82 2024:A/1 2.79 LYS163:B.NZ/1
A48:A.N7/1 2.88 2024:A/1 2.79 LYS163:B.NZ/1
A51:A.OP1/1 3.11 2031:A/1 2.97 ARG69:B.O/1
A51:A.O5'/1 3.23 2032:A/1 2.96 ARG69:B.NE/1
G53:A.OP2/1 2.49 2036:A/1 2.67 LYS1123:B.NZ/1
G53:A.N7/1 2.92 2027:A/1 3.24 LYS1123:B.NZ/1
G58:A.N3/1 2.9 2042:A/1 2.96 ASN459:B.ND2/1
G62:A.OP1/1 2.48 2043:A/1 2.51 ARG66:B.NH1/1
U63:A.OP2/1 2.59 2044:A/1 3.09 THR62:B.O/1
U63:A.OP2/1 2.59 2044:A/1 2.27 ARG69:B.NH2/1
U63:A.O4/1 2.51 2032:A/1 2.96 ARG69:B.NE/1
A68:A.OP2/1 3.15 2051:A/1 2.72 THR1098:B.OG1/1
A68:A.O5'/1 2.96 2051:A/1 3.04 THR1098:B.N/1
A68:A.O5'/1 2.96 2051:A/1 3.09 THR1098:B.O/1
A68:A.O5'/1 2.96 2051:A/1 2.72 THR1098:B.OG1/1
DG22:C.OP2/1 2.75 2064:B/1 3.04 THR924:B.OG1/1
DG6:D.OP2/1 2.83 2089:B/1 2.83 GLU1219:B.OE2/1
DG8:D.O3'/1 2.43 2078:B/1 3.49 ARG1114:B.NH2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2021

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