Show specific contacts
Show all contacts
Hide all contacts
[ Download ]

Nucleic atom dist Protein atom
G1:X.OP1/1 2.55 ARG607:A.NH2/1
G1:X.OP2/1 2.63 HIS406:A.ND1/1
G2:X.OP1/1 2.56 SER632:A.OG/1
G2:X.O2'/1 2.78 HIS574:A.ND1/1
G2:X.O2'/1 2.9 HIS574:A.ND1/1
G2:X.O6/1 2.73 HIS406:A.NE2/1
G2:X.O6/1 2.74 HIS406:A.NE2/1
U3:X.OP1/1 3.14 ILE633:A.N/1
A4:X.OP1/1 2.94 SER651:A.N/1
G6:X.OP1/1 2.87 GLU139:A.N/1
U7:X.OP1/1 2.78 GLN137:A.NE2/1
U7:X.OP2/1 2.9 LYS138:A.NZ/1
A8:X.OP1/1 2.85 ARG490:A.NH2/1
C9:X.OP1/1 3.39 ARG486:A.NH1/1
C9:X.O3'/1 3.04 ARG486:A.NH2/1
C10:X.OP1/1 3.04 ARG486:A.NH2/1
C10:X.O2'/1 2.86 ARG261:A.NH2/1
C10:X.O2/1 2.85 GLN260:A.NE2/1
G2:Y.OP1/1 2.46 LYS645:A.NZ/1
G2:Y.O2'/1 2.62 GLU264:A.OE2/1
G2:Y.N2/1 3.02 GLN260:A.OE1/1
G2:Y.N3/1 3.5 GLN260:A.NE2/1
U3:Y.OP1/1 3 ASN267:A.ND2/1
U3:Y.OP2/1 2.79 LYS648:A.NZ/1
A4:Y.OP1/1 2.6 ARG285:A.NH1/1
A4:Y.OP2/1 2.85 LYS648:A.NZ/1
C5:Y.OP1/1 2.91 GLN409:A.OE1/1
G6:Y.OP1/1 2.82 ARG375:A.N/1
U7:Y.OP1/1 2.74 GLY403:A.N/1
U7:Y.OP1/1 2.65 THR436:A.OG1/1
U7:Y.OP2/1 2.8 ARG375:A.NH1/1
U7:Y.OP2/1 3.3 GLY405:A.N/1
U7:Y.O2'/1 2.75 LYS56:A.NZ/1
A8:Y.OP1/1 2.85 VAL57:A.N/1
A8:Y.OP1/1 2.95 VAL57:A.N/1
A8:Y.OP2/1 2.84 SER404:A.N/1
A8:Y.OP2/1 2.61 SER404:A.OG/1
C9:Y.OP1/1 2.91 GLY82:A.N/1
C9:Y.OP1/1 2.71 THR103:A.OG1/1
C9:Y.OP2/1 2.78 ARG597:A.NH2/1
C9:Y.O2'/1 2.9 ASN109:A.ND2/1
C10:Y.OP1/1 2.61 SER85:A.OG/1
C10:Y.OP2/1 2.85 ARG597:A.NH1/1
C10:Y.O3'/1 2.66 GLU571:A.OE1/1
C10:Y.O2'/1 2.51 GLU571:A.OE2/1
C10:Y.O2'/1 2.93 HIS574:A.NE2/1
Show specific contacts
Show all contacts
Hide all contacts
[ Download ]
Nucleic atom d_n2w water d_p2w Protein atom
G2:X.OP1/1 2.72 121:X/1 2.9 GLY618:A.O/1
G2:X.OP1/1 2.93 133:X/1 2.96 ASN635:A.ND2/1
G2:X.OP2/1 2.83 133:X/1 2.96 ASN635:A.ND2/1
G2:X.O3'/1 3.13 1042:A/1 2.82 HIS575:A.N/1
G2:X.O3'/1 3.13 1042:A/1 3.16 HIS575:A.ND1/1
G2:X.O3'/1 3.19 1042:A/1 2.82 HIS575:A.N/1
G2:X.O2'/1 2.94 1042:A/1 2.82 HIS575:A.N/1
G2:X.O2'/1 2.94 1042:A/1 3.16 HIS575:A.ND1/1
G2:X.O2'/1 2.94 1042:A/1 2.9 LEU631:A.O/1
G2:X.O2'/1 2.93 1042:A/1 2.82 HIS575:A.N/1
G2:X.O2'/1 2.93 1042:A/1 3.16 HIS575:A.ND1/1
G2:X.O2'/1 2.93 1042:A/1 2.9 LEU631:A.O/1
U3:X.OP1/1 2.96 122:X/1 2.92 TRP650:A.N/1
U3:X.OP2/1 3 1026:A/1 2.8 SER632:A.OG/1
U3:X.OP2/1 3 1026:A/1 3.2 LYS634:A.N/1
U3:X.O3'/1 3.04 1190:A/1 3.02 ALA572:A.O/1
U3:X.O2'/1 3.04 1190:A/1 3.02 ALA572:A.O/1
A4:X.OP2/1 2.72 122:X/1 2.92 TRP650:A.N/1
C5:X.OP1/1 3 811:A/1 2.5 GLU139:A.OE1/1
C5:X.OP1/1 3 811:A/1 2.97 LYS144:A.NZ/1
C5:X.O2'/1 3.03 978:A/1 2.76 VAL141:A.N/1
C5:X.O2'/1 3.03 978:A/1 2.8 VAL141:A.N/1
G6:X.O2'/1 2.76 914:A/1 2.7 HIS135:A.ND1/1
U7:X.O2'/1 2.71 115:X/1 2.77 MET457:A.O/1
U7:X.O2'/1 2.69 112:X/1 2.97 ASN459:A.N/1
A8:X.OP1/1 3.13 130:X/1 2.85 ARG490:A.NH1/1
C9:X.OP1/1 2.53 101:X/1 2.91 ARG490:A.NH1/1
C9:X.OP2/1 2.79 130:X/1 2.85 ARG490:A.NH1/1
C9:X.O2'/1 2.64 106:X/1 2.89 GLN260:A.OE1/1
C10:X.OP1/1 2.72 120:X/1 2.86 ARG486:A.NH2/1
C10:X.OP2/1 2.63 102:X/1 2.84 ARG486:A.NH1/1
G1:Y.N2/1 2.9 924:A/1 2.71 GLU264:A.OE2/1
G2:Y.O3'/1 3.03 1181:A/1 3 ASN267:A.ND2/1
G2:Y.O2'/1 3.02 1181:A/1 3 ASN267:A.ND2/1
U3:Y.O2'/1 2.74 214:Y/1 2.88 GLN256:A.O/1
U3:Y.O2'/1 2.74 214:Y/1 2.77 GLN256:A.OE1/1
A4:Y.O2'/1 2.69 207:Y/1 3.23 GLN256:A.NE2/1
A4:Y.O2'/1 2.97 964:A/1 2.75 LYS373:A.NZ/1
A4:Y.N7/1 2.95 223:Y/1 3.09 LYS648:A.NZ/1
A4:Y.N6/1 3.35 223:Y/1 3.09 LYS648:A.NZ/1
A4:Y.N3/1 2.83 964:A/1 2.75 LYS373:A.NZ/1
C5:Y.OP2/1 2.61 814:A/1 2.52 ARG285:A.NH2/1
G6:Y.OP1/1 2.71 209:Y/1 2.95 GLN376:A.N/1
G6:Y.OP2/1 3.06 1128:A/1 3 ARG375:A.NH1/1
G6:Y.OP2/1 3.06 1128:A/1 2.92 ARG375:A.NH2/1
G6:Y.OP2/1 2.73 813:A/1 2.72 SER407:A.OG/1
G6:Y.OP2/1 2.73 813:A/1 2.51 GLN409:A.OE1/1
U7:Y.O4/1 2.73 210:Y/1 3.09 HIS406:A.N/1
A8:Y.OP1/1 2.79 889:A/1 2.9 HIS58:A.N/1
A8:Y.OP1/1 2.79 889:A/1 2.85 HIS58:A.ND1/1
A8:Y.OP1/1 2.79 889:A/1 2.68 GLN418:A.OE1/1
A8:Y.O2'/1 2.85 221:Y/1 2.91 GLN105:A.N/1
A8:Y.N7/1 2.78 927:A/1 2.71 SER404:A.O/1
A8:Y.N6/1 2.8 927:A/1 2.71 SER404:A.O/1
C9:Y.OP2/1 2.6 802:A/1 2.36 SER404:A.OG/1
C9:Y.OP2/1 2.6 802:A/1 2.86 ARG597:A.NH2/1
C9:Y.N4/1 3.05 927:A/1 2.71 SER404:A.O/1
C10:Y.OP1/1 2.57 202:Y/1 2.89 ASN109:A.ND2/1
C10:Y.O3'/1 2.67 206:Y/1 3.05 ARG597:A.NH2/1
C10:Y.O3'/1 2.67 206:Y/1 3.02 ARG600:A.N/1
C10:Y.N4/1 2.95 1006:A/1 3.06 ARG597:A.NE/1
[ Download ]
Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

text