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Nucleic atom dist Protein atom
G39:B.O3'/1 3.21 ASN252:A.ND2/1
G39:B.O2'/1 2.94 ASN252:A.ND2/1
A40:B.OP1/1 2.91 ASN253:A.N/1
A40:B.OP2/1 2.95 ASN252:A.N/1
A40:B.N7/1 3.07 ASN253:A.ND2/1
A40:B.N6/1 3.16 ASN216:A.OD1/1
A42:B.N6/1 3.05 ASP288:A.OD2/1
C43:B.OP2/1 2.46 LYS290:A.NZ/1
C43:B.O2/1 3.22 ASN241:A.ND2/1
C43:B.N3/1 2.61 GLU211:A.OE2/1
C43:B.N4/1 2.83 GLU211:A.OE1/1
A44:B.O2'/1 3.18 LYS239:A.NZ/1
U46:B.O2/1 2.87 ARG159:A.NH2/1
U46:B.N3/1 2.79 ASN123:A.OD1/1
A47:B.O3'/1 3.24 ARG159:A.O/1
A47:B.O2'/1 3.18 ASN123:A.N/1
A47:B.O2'/1 2.89 ARG159:A.O/1
C48:B.OP1/1 2.8 ARG159:A.N/1
C48:B.OP2/1 3.02 ARG201:A.NH1/1
C48:B.N3/1 3 THR202:A.N/1
C48:B.N4/1 2.74 THR202:A.OG1/1
A49:B.OP1/1 2.84 ARG201:A.NH1/1
A49:B.O4'/1 3.18 TRP120:A.NE1/1
A49:B.N3/1 2.84 TYR162:A.OH/1
G50:B.N7/1 2.85 ARG148:A.NE/1
G50:B.O6/1 3.03 ARG148:A.NH2/1
A51:B.OP1/1 2.89 SER151:A.N/1
A51:B.OP2/1 2.77 ARG158:A.NH1/1
A51:B.OP2/1 3.02 ARG158:A.NH2/1
A51:B.N6/1 2.92 ASP321:A.OD2/1
G52:B.OP1/1 2.99 ARG36:A.NH1/1
G52:B.N7/1 3.39 ARG38:A.NE/1
G52:B.N7/1 2.84 ARG38:A.NH2/1
G52:B.O6/1 2.93 ARG38:A.NE/1
G55:B.N7/1 3 LYS289:A.NZ/1
G55:B.O6/1 2.66 LYS289:A.N/1
U57:B.N3/1 2.8 PHE154:A.O/1
C58:B.OP1/1 3.02 ARG295:A.NE/1
C58:B.OP2/1 2.76 LYS299:A.NZ/1
C58:B.O2/1 2.82 ARG153:A.NH2/1
C58:B.N3/1 2.8 ARG153:A.NE/1
C58:B.N4/1 2.97 ARG153:A.O/1
A91:B.N3/1 2.68 SER283:A.OG/1
C92:B.OP1/1 3.05 ARG274:A.NH1/1
C92:B.O2/1 2.78 ASN216:A.ND2/1
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Nucleic atom d_n2w water d_p2w Protein atom
A41:B.N7/1 2.76 343:B/1 2.87 ASN216:A.N/1
A41:B.N7/1 2.76 343:B/1 3.05 ASN216:A.OD1/1
A41:B.N6/1 3.16 343:B/1 2.87 ASN216:A.N/1
A41:B.N6/1 3.16 343:B/1 3.05 ASN216:A.OD1/1
A42:B.N3/1 3.02 684:A/1 2.75 LYS290:A.NZ/1
C43:B.N4/1 2.93 666:A/1 2.72 ASP288:A.O/1
A44:B.N3/1 2.76 656:A/1 2.68 GLU211:A.OE2/1
A45:B.OP1/1 3.1 645:A/1 2.65 THR202:A.OG1/1
A45:B.O2'/1 2.63 638:A/1 2.62 THR202:A.OG1/1
U46:B.O2'/1 2.76 348:B/1 3.05 SER157:A.OG/1
A47:B.OP1/1 2.5 314:B/1 3.43 ARG201:A.NH2/1
A47:B.OP2/1 2.59 321:B/1 2.93 ASP203:A.OD2/1
A47:B.N7/1 3.02 638:A/1 2.62 THR202:A.OG1/1
A47:B.N6/1 3.31 638:A/1 2.62 THR202:A.OG1/1
C48:B.O2'/1 2.78 316:B/1 2.77 SER199:A.O/1
C48:B.N4/1 3.37 638:A/1 2.62 THR202:A.OG1/1
A49:B.OP2/1 2.54 316:B/1 2.77 SER199:A.O/1
A49:B.O2'/1 2.76 347:B/1 2.86 LYS198:A.NZ/1
A49:B.N7/1 2.85 363:B/1 2.97 SER199:A.N/1
A49:B.N7/1 2.85 363:B/1 3.23 SER199:A.OG/1
A51:B.OP1/1 2.67 327:B/1 2.9 LYS322:A.NZ/1
A51:B.N7/1 2.93 647:A/1 2.66 ASP321:A.OD1/1
A51:B.N7/1 2.93 647:A/1 2.76 LYS322:A.NZ/1
G52:B.OP1/1 2.75 340:B/1 3.2 ARG38:A.NH2/1
G52:B.O6/1 2.62 325:B/1 2.87 ARG38:A.N/1
G52:B.N2/1 2.62 621:A/1 2.54 MET33:A.O/1
G52:B.N2/1 2.62 621:A/1 3.06 THR35:A.OG1/1
A53:B.N3/1 2.83 360:B/1 2.86 SER151:A.O/1
A53:B.N3/1 2.83 360:B/1 3.03 PHE154:A.N/1
A53:B.N3/1 2.83 360:B/1 3.29 ARG158:A.NH1/1
G55:B.OP1/1 3.05 740:A/1 2.9 LYS289:A.NZ/1
U57:B.O4/1 2.92 742:A/1 2.9 PHE154:A.O/1
C58:B.N4/1 3 733:A/1 2.88 ARG153:A.O/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2020

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