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Nucleic atom dist Protein atom
G39:D.O2'/1 2.68 ASN252:C.ND2/1
A40:D.OP1/1 2.72 ASN253:C.N/1
A40:D.OP2/1 2.71 ASN252:C.N/1
A40:D.N7/1 3.22 ASN253:C.ND2/1
A42:D.N6/1 3.28 ASP288:C.OD2/1
C43:D.OP2/1 2.69 LYS290:C.NZ/1
C43:D.O2/1 2.96 ASN241:C.ND2/1
C43:D.N3/1 2.56 GLU211:C.OE2/1
C43:D.N4/1 2.79 GLU211:C.OE1/1
A44:D.O2'/1 2.78 LYS239:C.NZ/1
U46:D.O2/1 3.03 ARG159:C.NH2/1
U46:D.N3/1 2.76 ASN123:C.OD1/1
A47:D.O2'/1 3.28 ASN123:C.N/1
A47:D.O2'/1 2.9 ARG159:C.O/1
C48:D.OP1/1 2.79 ARG159:C.N/1
C48:D.OP2/1 3 ARG201:C.NH1/1
C48:D.N3/1 3.07 THR202:C.N/1
C48:D.N4/1 2.91 THR202:C.OG1/1
A49:D.OP1/1 2.9 ARG201:C.NH1/1
A49:D.O4'/1 3.15 TRP120:C.NE1/1
A49:D.N3/1 2.75 TYR162:C.OH/1
G50:D.O5'/1 3.12 ARG158:C.NH2/1
G50:D.N7/1 2.91 ARG148:C.NE/1
G50:D.O6/1 3.06 ARG148:C.NH2/1
A51:D.OP1/1 2.79 SER151:C.N/1
A51:D.OP2/1 2.84 ARG158:C.NH1/1
A51:D.OP2/1 3.04 ARG158:C.NH2/1
A51:D.N6/1 3.05 ASP321:C.OD2/1
G52:D.OP1/1 2.99 ARG36:C.NH1/1
G52:D.N7/1 3.42 ARG38:C.NE/1
G52:D.N7/1 2.94 ARG38:C.NH2/1
G52:D.O6/1 2.92 ARG38:C.NE/1
G55:D.O6/1 2.81 LYS289:C.N/1
U57:D.N3/1 2.84 PHE154:C.O/1
C58:D.OP1/1 3.07 ARG295:C.NE/1
C58:D.OP1/1 3.02 ARG295:C.NH2/1
C58:D.OP2/1 2.96 LYS299:C.NZ/1
C58:D.N4/1 2.94 ARG153:C.O/1
A91:D.N3/1 2.78 SER283:C.OG/1
C92:D.O2/1 2.69 ASN216:C.ND2/1
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Nucleic atom d_n2w water d_p2w Protein atom
A41:D.N7/1 2.96 662:C/1 2.7 ASN216:C.N/1
A41:D.N7/1 2.96 662:C/1 2.99 ASN216:C.OD1/1
A41:D.N6/1 3.19 662:C/1 2.7 ASN216:C.N/1
A41:D.N6/1 3.19 662:C/1 2.99 ASN216:C.OD1/1
A42:D.N3/1 2.97 347:D/1 3.01 LYS290:C.NZ/1
C43:D.N4/1 3.02 661:C/1 2.7 ASP288:C.O/1
A44:D.N3/1 2.76 325:D/1 2.91 GLU211:C.OE2/1
A45:D.OP1/1 2.5 305:D/1 2.96 THR202:C.O/1
A45:D.OP1/1 2.78 329:D/1 2.83 THR202:C.OG1/1
A45:D.O2'/1 2.73 645:C/1 2.66 THR202:C.OG1/1
U46:D.O2'/1 2.4 302:D/1 3.35 ARG159:C.NH1/1
A47:D.OP1/1 2.76 612:C/1 2.48 SER157:C.OG/1
A47:D.OP2/1 2.78 331:D/1 2.89 ASP203:C.OD2/1
A47:D.N7/1 2.87 645:C/1 2.66 THR202:C.OG1/1
A47:D.N6/1 3.08 645:C/1 2.66 THR202:C.OG1/1
C48:D.OP2/1 2.73 612:C/1 2.48 SER157:C.OG/1
C48:D.O2'/1 2.81 304:D/1 2.85 SER199:C.O/1
C48:D.N4/1 3.27 645:C/1 2.66 THR202:C.OG1/1
A49:D.OP2/1 2.46 304:D/1 2.85 SER199:C.O/1
A49:D.N7/1 2.87 339:D/1 2.99 SER199:C.N/1
A49:D.N7/1 2.87 339:D/1 3.07 SER199:C.OG/1
A49:D.N6/1 3.25 629:C/1 2.89 LYS191:C.NZ/1
A49:D.N6/1 3.25 629:C/1 2.62 GLU197:C.O/1
A49:D.N6/1 2.89 708:C/1 2.85 GLU197:C.OE1/1
G50:D.O6/1 2.81 333:D/1 2.98 THR118:C.OG1/1
A51:D.OP1/1 2.72 319:D/1 2.78 LYS322:C.NZ/1
A51:D.N7/1 3.01 650:C/1 2.67 ASP321:C.OD1/1
A51:D.N7/1 3.01 650:C/1 2.92 LYS322:C.NZ/1
G52:D.OP1/1 2.75 323:D/1 3 ARG38:C.NH2/1
G52:D.O6/1 2.57 309:D/1 2.85 ARG38:C.N/1
G52:D.N2/1 2.98 699:C/1 2.81 MET33:C.O/1
G52:D.N2/1 2.98 699:C/1 3.06 THR35:C.OG1/1
G52:D.N2/1 3.1 727:C/1 2.89 ARG36:C.O/1
A53:D.N3/1 2.76 326:D/1 3.02 SER151:C.O/1
A53:D.N3/1 2.76 326:D/1 3.02 PHE154:C.N/1
G55:D.OP1/1 2.82 334:D/1 3.04 LYS289:C.NZ/1
U57:D.O2/1 2.75 322:D/1 2.82 ARG153:C.O/1
U57:D.O4/1 2.82 335:D/1 2.97 PHE154:C.O/1
C58:D.N3/1 3.06 663:C/1 2.7 ARG153:C.NE/1
C58:D.N4/1 2.99 322:D/1 2.82 ARG153:C.O/1
A91:D.O2'/1 2.17 301:D/1 2.38 ASN273:C.OD1/1
A91:D.O2'/1 2.17 301:D/1 2.77 SER283:C.OG/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2020

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