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Nucleic atom dist Protein atom
G6:a.O6/1 2.73 SER100:e.N/1
A7:a.N6/1 2.76 GLN97:e.OE1/1
A8:a.N6/1 2.8 GLN54:d.OE1/1
G9:a.OP1/1 2.82 ALA127:e.N/1
A10:a.OP2/1 3.25 THR131:e.O/1
G11:a.O3'/1 3.46 LYS42:w.NZ/1
U13:a.OP1/1 3.2 ARG41:w.NH1/1
U13:a.O5'/1 2.81 ARG41:w.NH1/1
U14:a.OP2/1 2.69 ARG41:w.NH1/1
G15:a.O2'/1 3.1 ARG29:e.NE/1
G15:a.N2/1 3.03 SER22:e.O/1
A16:a.OP1/1 2.69 TYR39:w.OH/1
A16:a.OP2/1 2.79 ARG41:w.NH2/1
U17:a.OP1/1 2.71 ASN19:e.ND2/1
C18:a.OP1/1 2.92 ASN132:e.OD1/1
A19:a.OP2/1 2.85 ASN135:e.ND2/1
A33:a.O2'/1 2.89 GLN29:l.OE1/1
A33:a.N3/1 3.07 GLN29:l.OE1/1
C34:a.O4'/1 3.04 GLN29:l.OE1/1
G35:a.O2'/1 2.63 SER115:l.O/1
U37:a.OP1/1 2.99 ARG121:l.N/1
A502:a.O5'/1 2.68 SER115:l.OG/1
G506:a.N3/1 3.21 LYS42:w.NZ/1
A509:a.O2'/1 3.18 ARG56:d.NH2/1
C511:a.O2/1 3.42 HIS41:d.NE2/1
C518:a.OP2/1 3.19 ARG200:v.NH1/1
C518:a.O3'/1 2.97 SER47:l.O/1
C519:a.OP1/1 2.8 ARG28:w.NH1/1
C519:a.OP2/1 3.11 SER47:l.OG/1
C519:a.OP2/1 2.94 ARG28:w.NH2/1
A520:a.OP2/1 2.98 LEU49:l.N/1
G521:a.OP1/1 2.77 LYS51:l.NZ/1
G521:a.OP1/1 3.27 GLY71:l.N/1
G521:a.O5'/1 3.01 GLY69:l.O/1
G521:a.N7/1 2.87 ARG50:l.NH1/1
G521:a.N7/1 3.01 ARG50:l.NH2/1
G521:a.O6/1 2.79 ARG50:l.NH2/1
C522:a.OP1/1 2.87 GLY69:l.N/1
C522:a.OP2/1 2.58 TYR66:l.OH/1
C522:a.N4/1 3.1 ARG50:l.NH2/1
C526:a.OP1/1 2.74 LYS88:l.NZ/1
G529:a.O6/1 3.44 SER47:l.N/1
G530:a.O6/1 2.97 LYS31:w.N/1
U534:a.OP1/1 2.81 LYS44:w.NZ/1
A535:a.N7/1 3.07 LYS44:w.O/1
A535:a.N6/1 3.07 LYS44:w.O/1
G537:a.OP1/1 2.85 ARG110:l.NH2/1
G538:a.OP1/1 3.05 LYS111:l.N/1
G538:a.OP1/1 2.92 GLN112:l.N/1
G538:a.OP1/1 3.28 GLN112:l.O/1
G541:a.O2'/1 3.11 GLN40:d.N/1
G542:a.O3'/1 2.8 ARG14:d.NH2/1
G542:a.O2'/1 3.08 ARG14:d.NH2/1
U543:a.OP1/1 3.01 ARG14:d.NE/1
U543:a.O3'/1 2.99 ARG56:d.NH2/1
G544:a.OP1/1 2.78 ARG56:d.NH2/1
G544:a.OP1/1 3.2 GLN59:d.NE2/1
G544:a.OP1/1 2.78 ARG63:d.NH2/1
C545:a.OP2/1 2.98 GLN59:d.OE1/1
C545:a.OP2/1 3 GLN59:d.NE2/1
A546:a.OP2/1 3.23 ARG62:d.NH2/1
A547:a.OP2/1 2.8 ALA2:d.N/1
A547:a.O5'/1 3.27 ALA2:d.N/1
U552:a.O2'/1 2.73 PRO28:l.O/1
U552:a.O2'/1 3.38 GLY84:l.N/1
A554:a.OP1/1 2.72 SER19:l.OG/1
U562:a.O2/1 3.16 ALA13:l.N/1
C564:a.OP1/1 2.71 ARG12:l.NE/1
G567:a.O6/1 3.16 ARG12:l.NH2/1
C880:a.OP1/1 2.89 ASN5:l.ND2/1
G881:a.OP2/1 3.05 GLN6:l.NE2/1
C882:a.N4/1 2.8 GLN6:l.OE1/1
C910:a.OP1/1 3.18 ARG94:l.NH1/1
C912:a.OP1/1 3.04 LYS43:l.NZ/1
C912:a.O3'/1 3.22 LYS44:l.NZ/1
A913:a.OP1/1 3.27 LYS44:l.NZ/1
A913:a.OP2/1 2.97 LYS43:l.NZ/1
A913:a.OP2/1 2.86 LYS88:l.NZ/1
U921:a.O2'/1 2.5 THR24:e.O/1
C1054:a.N4/1 3.23 GLY211:v.O/1
A1055:a.O2'/1 2.86 ARG156:c.NE/1
A1055:a.O2'/1 2.81 ARG156:c.NH2/1
A1055:a.O2'/1 3.01 GLU161:c.O/1
U1056:a.OP1/1 3.09 GLU161:c.O/1
G1057:a.OP1/1 2.86 SER154:c.OG/1
C1071:a.OP1/1 2.81 ARG54:e.NH1/1
G1072:a.OP1/1 2.8 LYS62:e.NZ/1
U1075:a.OP2/1 3.45 ARG69:e.NH1/1
U1078:a.O2/1 2.94 ASN135:e.OD1/1
G1079:a.OP1/1 2.94 ARG138:e.NH2/1
G1079:a.O3'/1 2.71 TYR50:e.OH/1
A1080:a.OP1/1 2.92 TYR50:e.OH/1
A1081:a.OP2/1 2.73 LYS52:e.NZ/1
A1196:a.OP1/1 3.02 GLY210:v.O/1
G1387:a.OP1/1 2.78 LYS26:e.NZ/1
A1396:a.O2'/1 3.17 ARG29:e.NH2/1
C1397:a.OP2/1 2.57 ARG29:e.NH2/1
C1397:a.O4'/1 2.9 GLY37:w.N/1
C1397:a.O2/1 2.98 ARG212:v.NH2/1
C1400:a.O2/1 2.81 SER209:v.OG/1
A1410:a.O2'/1 2.75 THR7:w.O/1
A1913:A.O2'/1 3.14 LYS8:w.NZ/1
C1914:A.OP2/1 2.9 LYS8:w.NZ/1
C1914:A.O3'/1 3.15 GLU17:w.OE1/1
C1914:A.O2/1 3.03 LYS12:w.N/1
C1914:A.O2/1 3.12 ASP13:w.N/1
C1914:A.N3/1 3.42 LYS12:w.N/1
C1914:A.N4/1 3.03 GLN10:w.O/1
U1915:A.O2'/1 3.22 ASP13:w.OD1/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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