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Nucleic atom dist Protein atom
5CM8:C.OP1/1 2.74 GLY359:A.N/1
5CM8:C.OP2/1 2.84 TYR380:A.OH/1
DA9:C.OP1/1 3.17 ARG344:A.NH1/1
DA9:C.OP1/1 2.32 SER377:A.OG/1
DA9:C.OP2/1 2.41 LYS442:A.NZ/1
DA9:C.O5'/1 2.93 ARG344:A.NH1/1
DA9:C.O5'/1 3.22 GLN357:A.O/1
DG10:C.OP1/1 2.84 ARG344:A.N/1
DG10:C.OP2/1 2.45 TYR453:A.OH/1
DC11:C.OP2/1 2.48 LYS449:A.NZ/1
DA12:C.OP1/1 2.71 GLY302:A.N/1
DA12:C.OP1/1 2.76 GLY304:A.N/1
DG8:D.N2/1 2.41 GLN357:A.OE1/1
DA9:D.N3/1 2.57 SER356:A.OG/1
DG10:D.OP1/1 3.09 LYS316:A.NZ/1
DC13:D.OP1/1 2.8 LYS369:A.NZ/1
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Nucleic atom d_n2w water d_p2w Protein atom
DC3:D.N4/1 2.52 102:D/1 2.64 THR444:A.OG1/1

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2021

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