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Nucleic atom dist Protein atom
DT6:D.OP1/1 2.75 LYS254:A.NZ/1
3DR7:D.OP1/1 2.83 ASN171:A.ND2/1
3DR7:D.OP1/1 2.53 TYR238:A.OH/1
3DR7:D.OP2/1 2.96 ARG260:A.NH2/1
DT8:D.OP1/1 2.69 LYS57:A.NZ/1
DT8:D.OP2/1 2.92 ASN171:A.N/1
DT8:D.OP2/1 2.82 ARG260:A.NH2/1
DT9:D.OP1/1 2.78 HIS72:A.NE2/1
DT9:D.OP2/1 2.91 LYS57:A.NZ/1
DT9:D.O2/1 3.39 ARG74:A.NH1/1
DT10:D.OP1/1 2.85 LYS129:A.NZ/1
DC23:E.O2/1 2.7 ARG109:A.NE/1
DC23:E.N3/1 2.96 ARG109:A.NH2/1
DA24:E.OP1/1 2.88 LYS110:A.NZ/1
DA25:E.OP1/1 2.58 LYS90:A.NZ/1
DA25:E.OP1/1 3.17 HIS91:A.NE2/1
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Nucleic atom d_n2w water d_p2w Protein atom
DT5:D.OP2/1 2.84 117:D/1 3.4 LYS256:A.NZ/1
DT6:D.OP2/1 2.66 109:D/1 2.9 LYS256:A.NZ/1
DT6:D.O4/1 2.81 115:D/1 3.03 ARG109:A.NH2/1
3DR7:D.OP2/1 2.65 106:D/1 3.06 ARG260:A.NE/1
3DR7:D.OP2/1 2.65 106:D/1 3.04 GLY261:A.N/1
DT8:D.O4/1 3.22 550:A/1 2.89 ARG109:A.NH1/1
DT10:D.OP1/1 2.87 120:D/1 3.01 LYS129:A.NZ/1
DT10:D.OP2/1 2.88 403:A/1 2.41 TYR58:A.OH/1
DT10:D.OP2/1 2.72 114:D/1 3.18 LYS129:A.O/1
DC23:E.N4/1 3 115:D/1 3.03 ARG109:A.NH2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2021

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