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Nucleic atom dist Protein atom
DT-3:C.OP2/1 2.73 LYS91:B.NZ/1
DT-3:C.O4/1 3.05 ASN83:B.O/1
DC-2:C.OP1/1 2.92 LYS88:A.NZ/1
DC-2:C.OP2/1 2.79 ALA87:A.N/1
DC-2:C.N4/1 2.84 ASN83:B.O/1
DG-1:C.OP1/1 2.7 LYS61:A.NZ/1
DG-1:C.O6/1 2.79 GLN84:A.NE2/1
DG-1:C.O6/1 2.86 GLN84:B.NE2/1
DA0:C.N3/1 2.99 ARG170:B.NH2/1
DC1:C.O2/1 3.12 ARG170:A.NH1/1
DC1:C.N4/1 2.86 ASN83:B.OD1/1
DC1:C.N4/1 2.81 ASN83:A.OD1/1
DG2:C.OP2/1 2.99 ARG101:B.NH1/1
DG2:C.OP2/1 2.95 ARG101:B.NH2/1
DG2:C.OP2/1 2.95 ARG101:A.NH1/1
DG2:C.OP2/1 2.93 ARG101:A.NH2/1
DG2:C.N7/1 3.19 ARG94:B.NH2/1
DG2:C.N7/1 3.22 ARG94:A.NH2/1
DG2:C.O6/1 2.96 ASN83:B.ND2/1
DG2:C.O6/1 3 ASN83:A.ND2/1
DG2:C.N2/1 3.04 ASP162:B.OD1/1
DG2:C.N2/1 3.04 ASP162:A.OD1/1
DT3:C.OP1/1 3.42 HIS149:B.N/1
DT3:C.OP1/1 3.35 HIS149:A.N/1
DT3:C.OP1/1 2.91 HIS149:A.ND1/1
DT3:C.O5'/1 3.1 HIS147:A.O/1
DA4:C.OP1/1 2.96 HIS147:B.N/1
DA4:C.OP1/1 2.73 HIS147:B.ND1/1
DA4:C.OP1/1 2.95 HIS147:A.N/1
DA4:C.OP1/1 2.8 HIS147:A.ND1/1
DA-3:D.OP2/1 2.64 LYS91:A.NZ/1
DA-3:D.N6/1 3.08 ASN83:A.ND2/1
DC-2:D.OP1/1 2.93 LYS88:A.NZ/1
DC-2:D.OP1/1 3.28 LYS88:B.NZ/1
DC-2:D.OP2/1 2.84 ALA87:B.N/1
DC-2:D.N4/1 2.81 ASN83:A.O/1
DG-1:D.OP1/1 2.69 LYS61:A.NZ/1
DG-1:D.OP1/1 2.72 LYS61:B.NZ/1
DG-1:D.O6/1 2.83 GLN84:B.NE2/1
DG-1:D.O6/1 2.77 GLN84:A.NE2/1
DT0:D.O2/1 2.79 ARG170:A.NH2/1
DT0:D.O2/1 2.77 ARG170:B.NH2/1
DC1:D.O2/1 3.09 ARG170:B.NH1/1
DC1:D.N4/1 2.85 ASN83:A.OD1/1
DC1:D.N4/1 2.9 ASN83:B.OD1/1
DG2:D.OP2/1 2.88 ARG101:A.NH1/1
DG2:D.OP2/1 2.86 ARG101:A.NH2/1
DG2:D.OP2/1 2.91 ARG101:B.NH1/1
DG2:D.OP2/1 2.88 ARG101:B.NH2/1
DG2:D.N7/1 3.23 ARG94:A.NH2/1
DG2:D.N7/1 3.19 ARG94:B.NH2/1
DG2:D.O6/1 2.97 ASN83:A.ND2/1
DG2:D.O6/1 2.92 ASN83:B.ND2/1
DG2:D.N2/1 3.09 ASP162:A.OD1/1
DG2:D.N2/1 3.1 ASP162:B.OD1/1
DA3:D.OP1/1 3.22 HIS149:A.N/1
DA3:D.OP1/1 2.83 HIS149:A.ND1/1
DA3:D.OP1/1 2.81 HIS149:B.ND1/1
DA3:D.N6/1 3.49 ARG94:B.NH2/1
DG4:D.OP1/1 3.02 HIS147:A.ND1/1
DG4:D.OP1/1 3.26 HIS147:B.N/1
DG4:D.OP1/1 2.95 HIS147:B.ND1/1
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Nucleic atom d_n2w water d_p2w Protein atom
DT-3:C.O4/1 3.18 237:A/1 2.84 GLU81:A.OE1/1
DT-3:C.O4/1 3.18 237:A/1 2.81 ILE82:A.O/1
DT-3:C.O4/1 3.18 237:A/1 2.9 ASN83:A.ND2/1
DC-2:C.OP2/1 2.76 512:D/1 2.9 GLN84:B.OE1/1
DC-2:C.O2/1 2.72 486:D/1 2.8 ASP162:B.OD2/1
DG-1:C.OP2/1 2.71 285:A/1 2.63 THR92:A.OG1/1
DG-1:C.OP2/1 2.87 483:D/1 3.17 GLN84:B.NE2/1
DG-1:C.N2/1 3.04 448:A/1 2.85 ASP162:A.OD2/1
DG-1:C.N2/1 3.04 448:A/1 3.34 ARG170:B.NH2/1
DG-1:C.N2/1 3.03 408:B/1 3.39 ARG170:A.NH2/1
DG-1:C.N2/1 3.03 408:B/1 2.83 ASP162:B.OD2/1
DG-1:C.N3/1 3.17 500:D/1 2.84 ASP162:A.OD2/1
DG-1:C.N3/1 3.17 486:D/1 2.8 ASP162:B.OD2/1
DA0:C.OP1/1 2.75 413:A/1 2.69 THR142:A.O/1
DA0:C.OP1/1 2.75 413:A/1 3.24 ASN69:B.ND2/1
DA0:C.OP1/1 2.73 464:B/1 3.26 ASN69:A.ND2/1
DA0:C.OP1/1 2.73 464:B/1 2.64 THR142:B.O/1
DA0:C.OP1/1 2.99 407:B/1 2.93 ASN144:B.N/1
DA0:C.OP2/1 2.56 457:C/1 2.85 LYS66:B.NZ/1
DA0:C.OP2/1 2.62 406:D/1 2.84 LYS66:A.NZ/1
DA0:C.OP2/1 2.76 411:C/1 2.79 THR93:A.O/1
DA0:C.N6/1 3.05 429:D/1 3.31 GLN84:A.NE2/1
DC1:C.OP1/1 2.59 130:C/1 2.98 ASN69:B.ND2/1
DC1:C.OP1/1 2.59 495:C/1 2.99 ASN69:A.ND2/1
DC1:C.OP1/1 2.92 427:B/1 2.91 LYS135:B.NZ/1
DC1:C.OP1/1 2.92 427:B/1 2.9 SER163:B.OG/1
DC1:C.OP2/1 2.7 416:C/1 3.09 ARG101:B.NH1/1
DC1:C.OP2/1 2.75 410:C/1 2.89 ARG94:A.NH1/1
DC1:C.OP2/1 2.69 432:D/1 2.74 SER96:A.OG/1
DC1:C.OP2/1 2.69 432:D/1 3.09 ARG101:A.NH1/1
DG2:C.OP1/1 2.8 210:C/1 2.89 ILE104:B.O/1
DG2:C.OP1/1 2.85 514:A/1 2.7 ILE104:A.O/1
DG2:C.OP1/1 2.7 220:C/1 2.81 GLY169:A.O/1
DT3:C.OP1/1 2.82 516:A/1 2.7 ASP173:A.OD2/1
DA4:C.OP2/1 2.83 280:D/1 3.07 LYS114:A.NZ/1
DA-3:D.OP2/1 3.06 355:A/1 2.63 THR85:A.OG1/1
DA-3:D.N6/1 2.77 133:D/1 2.88 GLU81:B.OE1/1
DA-3:D.N6/1 2.77 133:D/1 2.93 ILE82:B.O/1
DA-3:D.N6/1 2.77 133:D/1 2.89 ASN83:B.ND2/1
DA-3:D.N6/1 2.86 237:A/1 2.84 GLU81:A.OE1/1
DA-3:D.N6/1 2.86 237:A/1 2.81 ILE82:A.O/1
DA-3:D.N6/1 2.86 237:A/1 2.9 ASN83:A.ND2/1
DC-2:D.OP2/1 2.47 334:D/1 2.82 GLN84:A.OE1/1
DC-2:D.OP2/1 3.23 513:D/1 3.14 GLN84:A.NE2/1
DC-2:D.O2/1 2.66 500:D/1 2.84 ASP162:A.OD2/1
DG-1:D.OP2/1 2.81 513:D/1 3.14 GLN84:A.NE2/1
DG-1:D.OP2/1 2.77 260:B/1 2.74 THR92:B.OG1/1
DG-1:D.N2/1 3.05 408:B/1 3.39 ARG170:A.NH2/1
DG-1:D.N2/1 3.05 408:B/1 2.83 ASP162:B.OD2/1
DG-1:D.N2/1 3.08 448:A/1 2.85 ASP162:A.OD2/1
DG-1:D.N2/1 3.08 448:A/1 3.34 ARG170:B.NH2/1
DG-1:D.N3/1 3.14 486:D/1 2.8 ASP162:B.OD2/1
DG-1:D.N3/1 3.14 500:D/1 2.84 ASP162:A.OD2/1
DT0:D.OP1/1 2.71 464:B/1 3.26 ASN69:A.ND2/1
DT0:D.OP1/1 2.71 464:B/1 2.64 THR142:B.O/1
DT0:D.OP1/1 2.73 413:A/1 2.69 THR142:A.O/1
DT0:D.OP1/1 2.95 425:A/1 2.88 ASN144:A.N/1
DT0:D.OP1/1 2.73 413:A/1 3.24 ASN69:B.ND2/1
DT0:D.OP2/1 2.61 406:D/1 2.84 LYS66:A.NZ/1
DT0:D.OP2/1 2.57 457:C/1 2.85 LYS66:B.NZ/1
DT0:D.OP2/1 2.81 422:C/1 2.87 THR93:B.O/1
DT0:D.O4/1 2.72 428:D/1 3.41 GLN84:B.NE2/1
DT0:D.O4/1 2.8 429:D/1 3.31 GLN84:A.NE2/1
DC1:D.OP1/1 2.6 495:C/1 2.99 ASN69:A.ND2/1
DC1:D.OP1/1 2.87 463:A/1 2.86 LYS135:A.NZ/1
DC1:D.OP1/1 2.87 463:A/1 2.76 SER163:A.OG/1
DC1:D.OP1/1 2.59 130:C/1 2.98 ASN69:B.ND2/1
DC1:D.OP2/1 2.68 432:D/1 2.74 SER96:A.OG/1
DC1:D.OP2/1 2.68 432:D/1 3.09 ARG101:A.NH1/1
DC1:D.OP2/1 2.74 415:C/1 2.85 ARG94:B.NH1/1
DC1:D.OP2/1 2.71 416:C/1 2.78 SER96:B.OG/1
DC1:D.OP2/1 2.71 416:C/1 3.09 ARG101:B.NH1/1
DG2:D.OP1/1 2.86 514:A/1 2.7 ILE104:A.O/1
DG2:D.OP1/1 2.81 210:C/1 2.89 ILE104:B.O/1
DG2:D.OP1/1 2.69 475:B/1 2.66 GLY169:B.O/1
DG4:D.OP2/1 2.64 280:D/1 3.07 LYS114:A.NZ/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2018

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