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Nucleic atom dist Protein atom
C1:M.O5'/1 3.06 TYR179:A.O/1
U2:M.OP1/1 2.88 TYR179:A.N/1
U2:M.OP2/1 3.16 ARG271:B.NH1/1
U2:M.OP2/1 2.93 ARG271:B.NH2/1
U2:M.O2'/1 2.42 LEU139:B.O/1
U2:M.O2/1 2.67 ARG138:B.O/1
U2:M.O2/1 2.55 LEU139:B.O/1
A3:M.N7/1 3.09 ASN282:B.ND2/1
A3:M.N6/1 2.43 ASN282:B.OD1/1
A4:M.OP1/1 2.7 ASN21:B.ND2/1
A4:M.OP2/1 2.3 LYS176:A.NZ/1
G5:M.OP1/1 3.44 ARG138:B.NH1/1
G5:M.O2'/1 2.98 PHE33:H.O/1
G5:M.O6/1 3.01 LEU174:A.O/1
G5:M.N2/1 2.72 SER173:A.O/1
A6:M.OP1/1 3.29 ARG138:B.NH1/1
A6:M.OP1/1 2.52 ARG35:H.N/1
A6:M.OP2/1 3.09 ARG138:B.NH1/1
A7:M.OP2/1 2.97 ARG35:H.NH1/1
A7:M.O2'/1 3.07 ASN86:B.OD1/1
A8:M.OP2/1 2.57 ARG284:H.NH2/1
U9:M.OP1/1 3.31 GLN277:H.NE2/1
U9:M.OP2/1 3.11 ARG85:B.N/1
U9:M.OP2/1 3.14 GLN277:H.NE2/1
U9:M.O4/1 2.92 ILE251:H.O/1
U10:M.OP1/1 2.59 LYS278:H.NZ/1
C11:M.O3'/1 3.19 PHE33:G.O/1
C11:M.O2'/1 2.12 PHE33:G.O/1
A12:M.OP1/1 2.62 ARG35:G.N/1
G14:M.OP2/1 2.55 ARG284:G.NH2/1
G14:M.O4'/1 3.31 ASN281:G.ND2/1
G14:M.O6/1 2.36 SER309:G.OG/1
G15:M.OP1/1 3.32 GLN277:G.NE2/1
G15:M.OP2/1 3.1 ARG69:H.N/1
G15:M.O2'/1 2.98 GLN248:G.OE1/1
C16:M.OP1/1 3.31 LYS278:G.NZ/1
G17:M.O2'/1 3.15 GLY353:F.O/1
G17:M.N2/1 3.33 LEU31:F.O/1
G18:M.OP1/1 2.8 ARG35:F.N/1
G18:M.OP1/1 2.82 ARG169:G.NH1/1
G19:M.O2'/1 2.67 ARG69:G.O/1
C20:M.OP2/1 2.25 ARG284:F.NH2/1
U21:M.OP1/1 2.6 HIS275:F.ND1/1
U21:M.OP2/1 2.59 GLN277:F.NE2/1
U22:M.OP1/1 2.89 LYS278:F.NZ/1
G23:M.O2'/1 2.81 PHE33:E.O/1
A24:M.OP1/1 2.88 ARG35:E.N/1
A24:M.OP1/1 2.85 ARG169:F.NH2/1
U25:M.O2'/1 2.39 ARG69:F.O/1
G26:M.OP1/1 2.78 GLU302:E.OE2/1
G26:M.OP2/1 2.45 ARG284:E.NH2/1
U27:M.OP1/1 2.76 HIS275:E.ND1/1
U27:M.OP2/1 2.82 GLN277:E.NE2/1
U27:M.OP2/1 3.43 ARG69:F.N/1
U27:M.O2/1 3.18 ARG69:F.NH1/1
C29:M.O2'/1 3.05 PHE33:D.O/1
G30:M.OP1/1 3.33 ARG35:D.N/1
G30:M.OP1/1 2.88 ARG35:D.NH1/1
G32:M.OP1/1 2.64 GLU302:D.OE2/1
G32:M.OP2/1 2.32 ARG284:D.NH2/1
U33:M.OP1/1 2.71 HIS275:D.ND1/1
U33:M.OP2/1 3.42 GLN277:D.NE2/1
U33:M.OP2/1 3.13 ARG69:E.N/1
U33:M.O2'/1 3.15 ARG69:E.NH1/1
U33:M.O2/1 2.93 GLU249:D.O/1
C34:M.OP2/1 2.33 GLN248:D.N/1
C34:M.OP2/1 3.02 GLN248:D.O/1
U35:M.OP1/1 2.52 ARG169:D.NH1/1
U35:M.O2'/1 3.14 PHE33:C.O/1
U35:M.O2'/1 3.07 GLY353:C.O/1
A36:M.OP1/1 2.53 ARG35:C.N/1
A36:M.OP1/1 2.47 ARG169:D.NH2/1
A36:M.OP2/1 3.35 ARG169:D.NH1/1
C38:M.OP2/1 3.45 ARG351:C.NH1/1
C38:M.O5'/1 2.87 ASN281:C.ND2/1
C38:M.O4'/1 3.42 ASN281:C.ND2/1
C38:M.O2'/1 3.31 ARG69:D.NE/1
C38:M.O2'/1 2.96 ARG69:D.NH2/1
C38:M.N4/1 2.6 PRO13:L.O/1
U39:M.OP1/1 2.56 SER247:C.OG/1
U39:M.OP1/1 2.48 HIS275:C.ND1/1
U39:M.OP2/1 3.02 ARG69:D.N/1
G41:M.OP1/1 2.67 SER309:C.OG/1
U42:M.O2'/1 3.28 ARG156:L.NH1/1
U42:M.O4/1 3.11 ALA18:L.N/1
C44:M.OP2/1 2.58 ARG156:L.NH1/1
A45:M.OP2/1 2.6 ASN108:L.ND2/1
A45:M.O2'/1 2.46 GLN153:L.NE2/1
C46:M.OP2/1 2.97 ASN108:L.ND2/1
C46:M.OP2/1 2.92 ARG111:L.NH1/1
C46:M.O4'/1 3.04 GLN153:L.NE2/1
C46:M.O2/1 3.23 GLN153:L.OE1/1
U47:M.OP2/1 2.3 ARG114:L.NE/1
U47:M.O5'/1 2.65 ARG114:L.NH2/1
G48:M.OP2/1 2.61 ARG118:L.NH1/1
G48:M.O2'/1 2.45 ARG115:L.NH1/1
C49:M.OP2/1 2.53 ARG115:L.NH2/1
C50:M.O2'/1 2.6 ARG115:L.NH2/1
G51:M.OP2/1 2.71 ARG119:L.NH1/1
G51:M.OP2/1 2.62 ARG119:L.NH2/1
U52:M.O4/1 3.3 ARG119:L.NH2/1
G56:M.O6/1 2.97 LYS106:L.NZ/1
C58:M.OP2/1 2.99 ARG102:L.NH1/1
C58:M.O2'/1 2.64 GLN149:L.NE2/1
C58:M.O2/1 3.31 GLN149:L.NE2/1
DC1:N.OP2/1 2.83 HIS313:A.ND1/1
DA2:N.OP2/1 2.85 ASN315:A.ND2/1
DG3:N.OP2/1 2.45 ARG319:A.NH2/1
DG4:N.OP2/1 2.52 LYS257:D.NZ/1
DG4:N.N2/1 3.29 ASN94:D.ND2/1
DG7:N.OP1/1 2.72 GLU357:C.OE1/1
DG10:N.N2/1 3.25 ASN94:E.ND2/1
DC11:N.O4'/1 3.48 ASN74:E.ND2/1
DA16:N.OP1/1 3.03 LYS258:F.NZ/1
DA16:N.OP2/1 2.88 GLN96:F.OE1/1
DA20:N.O3'/1 2.72 SER92:G.OG/1
DG21:N.O3'/1 3.02 GLN96:G.NE2/1
DC22:N.N4/1 3.13 SER262:G.OG/1
DC27:N.O4'/1 3.47 LEU95:H.N/1
DG28:N.OP1/1 3.17 LYS257:H.NZ/1
DG28:N.O4'/1 2.62 ASN94:H.ND2/1
DG28:N.O6/1 2.57 SER262:H.OG/1
DA31:N.OP1/1 2.87 GLU357:G.OE2/1
DG33:N.OP1/1 2.83 THR246:A.N/1
DG33:N.OP2/1 3.15 ILE97:B.N/1
DG34:N.O3'/1 3.14 LYS71:A.NZ/1
DG34:N.N2/1 2.77 ASN111:A.OD1/1
DT35:N.OP1/1 2.46 LYS71:A.NZ/1
DT35:N.O2/1 2.39 ASN111:A.ND2/1
DT25:O.OP1/1 2.79 ARG24:A.NH2/1
DT25:O.OP1/1 2.3 LYS28:A.NZ/1
DT25:O.O2/1 2.66 GLN249:A.OE1/1
DT25:O.N3/1 2.76 GLN249:A.OE1/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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