Interaction mode
Mode:  H-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb).
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SCOP Domain Family PDB entries Number of structures
DnaQ-like 3'-5' exonuclease
(c.55.3.5)
1l3u 1l3v 1l5u 1njw 1njx 1nk0 1nk5 1nk8 1nkb 1nkc 1nke 2hhu 2hw3 2pyj 2pzs 15
Eukaryotic DNA topoisomerase I, catalytic core
(d.163.1.2)
1a35 1k4s 1k4t 1rr8 1rrj 1sc7 1seu 1t8i 8
Middle domain of MutM-like DNA repair proteins
(a.156.1.2)
1kfv 1nnj 1pji 1pjj 1pm5 1tdz 1xc8 2opf 9
Leucine zipper domain
(h.1.3.1)
1d66 1dh3 1qp9 1zme 3coq 7
Transcription factor IIB (TFIIB), core domain
(a.74.1.2)
1ais 1d3u 1vol 3
Eukaryotic DNA topoisomerase I, dispensable insert domain
(a.2.8.1)
1a36 1r49 2
Heat-shock transcription factor
(a.4.5.22)
1fyl 1fym 2
DNA-binding N-terminal domain of transcription activators
(a.6.1.3)
1exi 1exj 2
Classic zinc finger, C2H2
(g.37.1.1)
1ubd 1un6 4
AraC type transcriptional activator
(a.4.1.8)
1d5y 3
TBP-associated factors, TAFs
(a.22.1.3)
1jfi 1
MarR-like transcriptional regulators
(a.4.5.28)
1fzp 1
Restriction endonuclease EcoRV
(c.52.1.2)
2rve 1
Restriction endonuclease FokI, C-terminal (catalytic) domain
(c.52.1.12)
1fok 1
SRF-like
(d.88.1.1)
1hbx 1
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