Interaction mode
Mode:  H-Bb H-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
HLH
(PF00010.25)
5gnj 1hlo 5i50 5nj8 2ql2 1nlw 1nkp 1mdy 4atk 4h10 1am9 4zpr 2ypb 2ypa 4ati 41
bZIP_2
(PF07716.14)
1h89 1gtw 1h8a 1h88 1gu5 1gu4 1hjb 1io4 1ysa 2e42 2e43 26
bZIP_1
(PF00170.20)
2wt7 2h7h 5t01 1jnm 5vpe 1a02 1fos 5vpf 1t2k 1s9k 22
Homeobox
(PF00046.28)
1k61 1akh 1ahd 5z2t 1o4x 4xid 5ego 1zq3 1yrn 10
SRF-TF
(PF00319.17)
3p57 6bz1 1c7u 1egw 1mnm 1tqe 1k6o 1n6j 19
bZIP_Maf
(PF03131.16)
4eot 2wty 2wt7 3a5t 4auw 1skn 12
Histone
(PF00125.23)
5cpj 5b40 3w96 3kxb 10
HTH_27
(PF13463.5)
5k5o 5k5r 5k5q 5kk1 5
TetR_N
(PF00440.22)
4gcl 4pxi 4l62 4
Sigma70_r3
(PF04539.15)
5vi8 4xlq 5tw1 3
Myb_DNA-bind_6
(PF13921.5)
1h8a 3osf 3osg 3
Sigma70_r2
(PF04542.13)
4xls 6b6h 5
Integrase_Zn
(PF02022.18)
5ejk 3jca 3
Myb_DNA-binding
(PF00249.30)
3zqc 5eyb 2
Sigma70_r4
(PF04545.15)
6ca0 6bzo 2
RNA_pol_Rpb1_1
(PF04997.11)
6c04 5x22 2
GerE
(PF00196.18)
1h0m 4
HTH_24
(PF13412.5)
5f7q 4
MatP
(PF06303.11)
4d8j 3
Pou
(PF00157.16)
3d1n 1
HTH_AraC
(PF00165.22)
1zgw 1
Ets
(PF00178.21)
2stw 1
Forkhead
(PF00250.17)
5dui 1
LacI
(PF00356.20)
1osl 1
Trans_reg_C
(PF00486.27)
2z33 1
TFIIF_beta
(PF02270.14)
5fyw 1
Homeobox_KN
(PF05920.10)
5ego 1
Put_DNA-bind_N
(PF06971.12)
3ket 1
TF_Zn_Ribbon
(PF08271.11)
6f40 1
Spo0A_C
(PF08769.10)
1lq1 1
ParB
(PF08775.9)
3w3c 1
DBD_Tnp_Hermes
(PF10683.8)
4d1q 1
HTH_18
(PF12833.6)
1d5y 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Leucine zipper domain
(h.1.3.1)
1a02 1dgc 1dh3 1fos 1gd2 1h88 1h89 1h8a 1hjb 1io4 1jnm 1nwq 1s9k 1t2k 1ysa 2c9l 2c9n 2dgc 2e42 2e43 2h7h 40
HLH, helix-loop-helix DNA-binding domain
(a.38.1.1)
1am9 1hlo 1mdy 1nkp 1nlw 12
Classic zinc finger, C2H2
(g.37.1.1)
1a1g 1a1k 1jk2 1tf6 5
GerE-like (LuxR/UhpA family of transcriptional regulators)
(a.4.6.2)
1h0m 1l3l 5
Eukaryotic DNA topoisomerase I, dispensable insert domain
(a.2.8.1)
1rrj 1
Homeodomain
(a.4.1.1)
1o4x 1
Myb/SANT domain
(a.4.1.3)
2qhb 1
AraC type transcriptional activator
(a.4.1.8)
1bl0 1
CAP C-terminal domain-like
(a.4.5.4)
2cgp 1
A DNA-binding domain in eukaryotic transcription factors
(a.37.1.1)
1skn 1
MarR-like transcriptional regulators
(a.4.5.28)
1fzp 1
Eukaryotic DNA topoisomerase I, catalytic core
(d.163.1.2)
1a36 1
Nuclear receptor
(g.39.1.2)
1glu 1
© NPIDB team 2003 - 2019

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