Interaction mode
Mode:  H-Bb H-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
HLH
(PF00010.25)
4ati 2ql2 1mdy 1nkp 4atk 4h10 1hlo 1am9 2ypb 5i50 1nlw 4zpr 2ypa 33
bZIP_2
(PF07716.14)
1io4 1gtw 1h89 1h88 1gu5 1gu4 1h8a 2e42 2e43 1ysa 1hjb 24
bZIP_1
(PF00170.20)
2h7h 2wt7 1t2k 1s9k 1jnm 1fos 1a02 13
Homeobox
(PF00046.28)
2h1k 1akh 1k61 4xid 1zq3 1yrn 1o4x 8
SRF-TF
(PF00319.17)
1c7u 1k6o 3p57 1tqe 1mnm 1n6j 13
bZIP_Maf
(PF03131.16)
4auw 4eot 1skn 3a5t 2wt7 2wty 10
Histone
(PF00125.23)
3kxb 5cpj 3w96 5b40 10
HTH_27
(PF13463.5)
5k5r 5k5q 5k5o 5kk1 5
Sigma70_r2
(PF04542.13)
4xln 4xlr 4xls 5
TetR_N
(PF00440.22)
4gcl 4pxi 4l62 4
GerE
(PF00196.18)
1h0m 1l3l 5
Integrase_Zn
(PF02022.18)
3jca 5ejk 3
Myb_DNA-binding
(PF00249.30)
3zqc 5eyb 2
Forkhead
(PF00250.17)
5dui 3qrf 2
Myb_DNA-bind_6
(PF13921.5)
3osf 2
Pou
(PF00157.16)
3d1n 1
HTH_AraC
(PF00165.22)
1zgw 1
Topoisom_I
(PF01028.19)
1rrj 1
TFIIF_beta
(PF02270.14)
5fyw 1
Sigma70_r3
(PF04539.15)
4xlq 1
RNA_pol_Rpb1_1
(PF04997.11)
2o5i 1
Homeobox_KN
(PF05920.10)
5ego 1
Spo0A_C
(PF08769.10)
1lq1 1
ParB
(PF08775.9)
3w3c 1
HTH_18
(PF12833.6)
1d5y 1
RAG1
(PF12940.6)
3jbx 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Leucine zipper domain
(h.1.3.1)
1a02 1dgc 1dh3 1fos 1gd2 1h88 1h89 1h8a 1hjb 1io4 1jnm 1nwq 1s9k 1t2k 1ysa 2c9l 2c9n 2dgc 2e42 2e43 2h7h 40
HLH, helix-loop-helix DNA-binding domain
(a.38.1.1)
1am9 1hlo 1mdy 1nkp 1nlw 12
Classic zinc finger, C2H2
(g.37.1.1)
1a1g 1a1k 1jk2 1tf6 5
GerE-like (LuxR/UhpA family of transcriptional regulators)
(a.4.6.2)
1h0m 1l3l 5
Eukaryotic DNA topoisomerase I, dispensable insert domain
(a.2.8.1)
1rrj 1
Homeodomain
(a.4.1.1)
1o4x 1
Myb/SANT domain
(a.4.1.3)
2qhb 1
AraC type transcriptional activator
(a.4.1.8)
1bl0 1
CAP C-terminal domain-like
(a.4.5.4)
2cgp 1
A DNA-binding domain in eukaryotic transcription factors
(a.37.1.1)
1skn 1
MarR-like transcriptional regulators
(a.4.5.28)
1fzp 1
Eukaryotic DNA topoisomerase I, catalytic core
(d.163.1.2)
1a36 1
Nuclear receptor
(g.39.1.2)
1glu 1
© NPIDB team 2003 - 2017

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