Interaction mode
Mode:  H-Bb H-Mj H-Mn L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
HMG_box
(PF00505.18)
4nnu 4nod 3tq6 3tmm 9
HMG_box_2
(PF09011.9)
3tq6 4qr9 1ckt 5
TetR_N
(PF00440.22)
2yvh 1
rve
(PF00665.25)
3jca 1
Sigma70_r2
(PF04542.13)
4xlq 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
DNA polymerase beta, N-terminal domain-like
(a.60.6.1)
2bcq 2bcr 2bcs 2bcu 2bcv 2i9g 6
Methylated DNA-protein cysteine methyltransferase, C-terminal domain
(a.4.2.1)
1t38 1t39 1yfh 4
GalR/LacI-like bacterial regulator
(a.35.1.5)
1efa 1rzr 2pe5 3
T7 RNA polymerase
(e.8.1.3)
1h38 1s0v 7
Uracil-DNA glycosylase
(c.18.1.1)
4skn 1
Nuclear receptor
(g.39.1.2)
2nll 1
© NPIDB team 2003 - 2017

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