Interaction mode
Mode:  H-Bb H-Mj H-Mn L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
zf-H2C2_2
(PF13465.8)
1a1g 1a1i 1a1j 1a1k 1jk1 1jk2 4r2a 4r2d 8
Topoisom_I
(PF01028.22)
1a35 1ej9 1rrj 2h7g 3igc 5
MethyltransfD12
(PF02086.17)
1yfj 1yfl 5
DNA_alkylation
(PF08713.13)
3jxz 3jy1 2
LacI
(PF00356.23)
7ce1 4
TetR_N
(PF00440.25)
3zql 4
DNA_pol_A
(PF00476.22)
4xvm 1
Phage_integrase
(PF00589.24)
5jjv 1
Trp_repressor
(PF01371.21)
1co0 1
Piwi
(PF02171.19)
4n47 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
GalR/LacI-like bacterial regulator
(a.35.1.5)
1bdh 1bdi 1efa 1qp4 1qqb 1rzr 2pe5 2puf 10
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