Interaction mode
Mode:  H-Bb H-Mj H-Mn L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
YqaJ
(PF09588.9)
3slp 3sm4 4wuz 3
RAG1
(PF12940.6)
3jby 6cg0 3
RE_EcoO109I
(PF14511.5)
1wte 2


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
Export table
SCOP Domain Family PDB entries Number of structures
Very short patch repair (VSR) endonuclease
(c.52.1.15)
1cw0 1
DNA-binding domain of intron-encoded endonucleases
(d.285.1.1)
1u3e 1
© NPIDB team 2003 - 2019

text