Interaction mode
Mode:  H-Bb H-Mj H-Mn L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
HMG_box
(PF00505.21)
1gt0 1hrz 1j5n 1o4x 1qrv 2gzk 3f27 3nm9 3tq6 3u2b 4euw 4nnu 4s2q 4y60 5jgh 5jh0 6erp 6erq 6hc3 6ht5 6l6y 6t78 6t90 6yov 36
HMG_box_2
(PF09011.12)
3tq6 4nnu 6erp 6hb4 6hc3 13
RAG1
(PF12940.9)
6cij 6dbx 6oes 3
DNA_pol_A
(PF00476.22)
1sks 4dsl 2
Homeodomain
(PF00046.31)
1k61 1
Phage_integrase
(PF00589.24)
2a3v 1
HhH-GPD
(PF00730.27)
2i5w 1
DNA_pol_B_thumb
(PF14791.8)
1huz 1
C_LFY_FLO
(PF17538.4)
4bhk 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
T7 RNA polymerase
(e.8.1.3)
1msw 1
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