Interaction mode
Mode:  H-Bb H-Mj H-Mn L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
HMG_box
(PF00505.18)
1gt0 4y60 5jgh 5jh0 6erp 4s2q 6erq 1j5n 1o4x 2gzk 3nm9 3u2b 4euw 18
HMG_box_2
(PF09011.9)
4nnu 6erp 3
RAG1
(PF12940.6)
6cg0 6cij 2
DNA_pol_A
(PF00476.19)
4dsl 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
T7 RNA polymerase
(e.8.1.3)
1msw 1
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