Interaction mode
Mode:  H-Bb H-Mj H-Mn S-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), helix(es) (H) with the minor groove of DNA (Mn), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_pol_A
(PF00476.19)
4xvl 4xvk 4bdp 4b9s 1ua1 1nk5 1l3u 7
RNase_T
(PF00929.23)
4fzy 1
Bse634I
(PF07832.10)
3v21 1
RestrictionMunI
(PF11407.7)
1d02 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Very short patch repair (VSR) endonuclease
(c.52.1.15)
1odg 1
DNA-binding domain of intron-encoded endonucleases
(d.285.1.1)
1t2t 1
© NPIDB team 2003 - 2019

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