Interaction mode
Mode:  H-Bb H-Mj H-Mn S-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), helix(es) (H) with the minor groove of DNA (Mn), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_pol_A
(PF00476.22)
1l3s 1l3u 1njw 1njx 1nk0 1nk4 1nk5 1nk6 1nk8 1t7p 1u45 1u48 1ua1 2bdp 2hhv 2hhx 2xy7 3bdp 3lwl 3lwm 4b9n 4b9s 4bdp 4dsi 4dsk 4dwi 4e0d 4f8r 4xvk 4xvl 6dsu 6dsv 6dsw 33
RE_HindIII
(PF09518.12)
2e52 3wvg 3wvh 3wvi 3wvp 20
RestrictionMunI
(PF11407.10)
1d02 2
RNase_T
(PF00929.26)
4fzy 1
MethyltransfD12
(PF02086.17)
1yfl 1
Bse634I
(PF07832.13)
3v21 1
YqaJ
(PF09588.12)
3sm4 1
DNA_pol_B_thumb
(PF14791.8)
4p4p 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Very short patch repair (VSR) endonuclease
(c.52.1.15)
1odg 1
DNA-binding domain of intron-encoded endonucleases
(d.285.1.1)
1t2t 1
© NPIDB team 2003 - 2021

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