Interaction mode
Mode:  H-Bb H-Mj L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
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SCOP Domain Family PDB entries Number of structures
Classic zinc finger, C2H2
(g.37.1.1)
1a1f 1a1g 1a1h 1a1i 1a1j 1a1k 1a1l 1aay 1f2i 1jk1 1jk2 1llm 1p47 1tf6 1un6 1zaa 2drp 2gli 39
GalR/LacI-like bacterial regulator
(a.35.1.5)
1jfs 1jft 1jh9 1pnr 1qp0 1qp7 1qpz 1qqa 1vpw 1zay 2pua 2pub 2puc 2pud 2pue 2pug 16
Phage repressors
(a.35.1.2)
1lli 1lmb 1per 1rio 1rpe 2or1 2r1j 3cro 16
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1a3q 1le9 1ooa 1ram 2i9t 2o61 2v2t 8
Zn2/Cys6 DNA-binding domain
(g.38.1.1)
1d66 1hwt 1pyi 1qp9 1zme 2hap 3coq 10
CAP C-terminal domain-like
(a.4.5.4)
1cgp 1ruo 1zrc 1zrd 1zre 7
Iron-dependent repressor protein
(a.4.5.24)
1c0w 1ddn 1f5t 1u8r 17
Replication initiation protein
(a.4.5.10)
1rep 2nra 2z9o 4
lambda integrase-like, N-terminal domain
(a.60.9.1)
1flo 1m6x 1p4e 11
Myb/SANT domain
(a.4.1.3)
1h89 1msf 2
POU-specific domain
(a.35.1.1)
1cqt 1ic8 3
Trp repressor, TrpR
(a.4.12.1)
1co0 1rcs 2
Zinc finger design
(k.12.1.1)
1g2f 2i13 3
DNA-binding domain of rap1
(a.4.1.6)
1ign 4
GntR-like transcriptional regulators
(a.4.5.6)
1hw2 1
Transcription factor IIB (TFIIB), core domain
(a.74.1.2)
1d3u 1
DNA repair glycosylase, 2 C-terminal domains
(a.96.1.3)
1diz 1
Lambda integrase-like, catalytic core
(d.163.1.1)
1ouq 1
Erythroid transcription factor GATA-1
(g.39.1.1)
1gat 1
Nuclear receptor
(g.39.1.2)
1r0o 1
© NPIDB team 2003 - 2017

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