Interaction mode
Mode:  H-Bb H-Mj L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
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SCOP Domain Family PDB entries Number of structures
Recombinase DNA-binding domain
1gdt 1tc3 1u78 1zr4 8
Paired domain
1k78 1mdm 3
GntR-like transcriptional regulators
1h9t 1hw2 3
Lambda integrase-like, catalytic core
1nzb 1q3u 2
1hlv 1
Restriction endonuclease FokI, N-terminal (recognition) domain
1fok 1
MarR-like transcriptional regulators
1z9c 1
Rel/Dorsal transcription factors, DNA-binding domain
1ooa 1
Classic zinc finger, C2H2
1yui 1
Zn2/Cys6 DNA-binding domain
1f5e 1
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