Interaction mode
Mode:  H-Bb H-Mj L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
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SCOP Domain Family PDB entries Number of structures
Recombinase DNA-binding domain
(a.4.1.2)
1gdt 1tc3 1u78 1zr4 8
Paired domain
(a.4.1.5)
1k78 1mdm 3
GntR-like transcriptional regulators
(a.4.5.6)
1h9t 1hw2 3
Lambda integrase-like, catalytic core
(d.163.1.1)
1nzb 1q3u 2
Centromere-binding
(a.4.1.7)
1hlv 1
Restriction endonuclease FokI, N-terminal (recognition) domain
(a.4.5.12)
1fok 1
MarR-like transcriptional regulators
(a.4.5.28)
1z9c 1
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1ooa 1
Classic zinc finger, C2H2
(g.37.1.1)
1yui 1
Zn2/Cys6 DNA-binding domain
(g.38.1.1)
1f5e 1
© NPIDB team 2003 - 2017

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