Interaction mode
Mode:  H-Bb H-Mj L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
TrmB
(PF01978.18)
5bpd 5bpi 2
Pou
(PF00157.16)
3d1n 4
HLH
(PF00010.25)
4ati 1
Homeobox
(PF00046.28)
1le8 1
Zn_clus
(PF00172.17)
2hap 1
RTP
(PF02334.15)
2efw 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Classic zinc finger, C2H2
(g.37.1.1)
1a1f 1a1g 1a1h 1a1i 1a1j 1a1k 1a1l 1f2i 1jk1 1jk2 1llm 1p47 1ubd 2drp 22
Homeodomain
(a.4.1.1)
1le8 1
Trp repressor, TrpR
(a.4.12.1)
1rcs 1
© NPIDB team 2003 - 2017

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