Interaction mode
Mode:  H-Bb H-Mj S-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Forkhead
(PF00250.20)
2as5 2uzk 3qrf 4wk8 6akp 6
zf-H2C2_2
(PF13465.8)
2i13 5t00 6df5 6dfb 6jnn 6
z-alpha
(PF02295.19)
1qbj 1sfu 3irr 4ka4 8
CENP-X
(PF09415.12)
4ndy 4ne1 5
PhdYeFM_antitox
(PF02604.21)
4zm2 6l8e 4
MerR_1
(PF13411.8)
5c8e 5i44 3
Histone
(PF00125.26)
6m4h 6y35 2
CBFD_NFYB_HMF
(PF00808.25)
6y35 6y37 2
PPV_E2_C
(PF00511.19)
2ayg 2
Ets
(PF00178.24)
3wty 1
Penicillinase_R
(PF03965.18)
1sax 1
zf-met
(PF12874.9)
6e93 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Viral DNA-binding domain
(d.58.8.1)
2ayg 2
Classic zinc finger, C2H2
(g.37.1.1)
2gli 1
Penicillinase repressor
(a.4.5.39)
1sax 1
© NPIDB team 2003 - 2021

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