Interaction mode
Mode:  H-Bb H-Mj S-Bb L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb).
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SCOP Domain Family PDB entries Number of structures
Nucleosome core histones
1eqz 1f66 1id3 1m18 1m19 1m1a 1p34 1p3a 1p3b 1p3f 1p3g 1p3i 1p3k 1p3l 1p3m 1p3o 1p3p 1s32 1u35 1zla 2cv5 2f8n 2fj7 2nqb 3c1b 3c1c 35
Nuclear receptor
1a6y 1by4 1dsz 1ga5 1hcq 1hlz 1kb2 1kb4 1kb6 1lat 1r0n 1r0o 1r4i 1r4o 2han 2nll 29
ets domain
1bc7 1k78 1k79 1k7a 1mdm 1pue 7
Replication terminator protein (RTP)
1f4k 2dpd 2efw 5
Interferon regulatory factor
2irf 2o6g 2pi0 6
1pt3 1v14 1v15 6
Viral DNA-binding domain
1jj4 2bop 2
Penicillinase repressor
1sax 1xsd 2
Replication initiation protein
2nra 1
Heat-shock transcription factor
3hts 1
2ief 1
1gxp 2
MarR-like transcriptional regulators
1z9c 1
39 kda initiator binding protein, IBP39, N-terminal domain
1pp8 2
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