Interaction mode
Mode:  H-Bb H-Mj S-Bb L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
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SCOP Domain Family PDB entries Number of structures
Restriction endonuclease EcoRI
(c.52.1.1)
1ckq 1eri 1qps 1qrh 1qri 5
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1owr 1s9k 2as5 2o93 5
Restriction endonuclease BglII
(c.52.1.5)
1d2i 1dfm 4
Classic zinc finger, C2H2
(g.37.1.1)
1f2i 2drp 5
Restriction endonuclease FokI, N-terminal (recognition) domain
(a.4.5.12)
1fok 1
lambda integrase-like, N-terminal domain
(a.60.9.1)
1m6x 1
Lambda integrase-like, catalytic core
(d.163.1.1)
1q3v 1
Zinc finger design
(k.12.1.1)
1mey 2
© NPIDB team 2003 - 2017

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