Interaction mode
Mode:  H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
Phage_integrase
(PF00589.21)
1crx 2hoi 3c28 3c29 3mgv 4crx 2hof 1q3v 1q3u 1pvr 1ouq 1nzb 1ma7 1kbu 1xns 2crx 1xo0 29
GntR
(PF00392.20)
4egz 4u0y 4wwc 6
UDG
(PF03167.18)
5jxy 5t2w 5hf7 3
MarR
(PF01047.21)
1z9c 5h3r 4
PAX
(PF00292.17)
1pdn 6pax 2
Trans_reg_C
(PF00486.27)
4s04 4
CP2
(PF04516.14)
5mpf 2
CtsR
(PF05848.10)
3h0d 2
RE_HindIII
(PF09518.9)
3wvp 2
HTH_1
(PF00126.26)
5xxp 1
Forkhead
(PF00250.17)
2hdc 1
IRF
(PF00605.16)
2o61 1
Rep_3
(PF01051.20)
1rep 1
Cdc6_C
(PF09079.10)
2qby 1
HTH_17
(PF12728.6)
6ama 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
Export table
SCOP Domain Family PDB entries Number of structures
DNA-binding domain from NDT80
(b.2.5.7)
1mnn 2etw 2euv 2euw 2eux 2evf 2evg 2evh 2evi 2evj 10
Lambda integrase-like, catalytic core
(d.163.1.1)
1crx 1nzb 1ouq 1q3u 1q3v 2hoi 11
Paired domain
(a.4.1.5)
1pdn 6pax 2
MarR-like transcriptional regulators
(a.4.5.28)
1z9c 2
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1a02 1
Restriction endonuclease MunI
(c.52.1.8)
1d02 2
© NPIDB team 2003 - 2019

text