Interaction mode
Mode:  H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
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SCOP Domain Family PDB entries Number of structures
DNA-binding domain from NDT80
1mnn 2etw 2euv 2euw 2eux 2evf 2evg 2evh 2evi 2evj 10
Lambda integrase-like, catalytic core
1crx 1nzb 1ouq 1q3u 1q3v 2hoi 11
Paired domain
1pdn 6pax 2
MarR-like transcriptional regulators
1z9c 2
Rel/Dorsal transcription factors, DNA-binding domain
1a02 1
Restriction endonuclease MunI
1d02 2
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