Interaction mode
Mode:  H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
Phage_integrase
(PF00589.21)
2hoi 3c29 1crx 3mgv 4crx 2hof 2crx 1q3v 1q3u 1pvr 1ouq 1nzb 1ma7 1kbu 1xns 1xo0 27
RE_HindIII
(PF09518.9)
3wvg 3wvi 3wvh 8
GntR
(PF00392.20)
4u0y 4egz 4wwc 6
MarR_2
(PF12802.6)
4lln 4lll 7
PAX
(PF00292.17)
1pdn 6pax 2
Trans_reg_C
(PF00486.27)
4s04 4
CtsR
(PF05848.10)
3h0d 2
Forkhead
(PF00250.17)
2hdc 1
IRF
(PF00605.16)
2o61 1
MarR
(PF01047.21)
1z9c 1
Rep_3
(PF01051.20)
1rep 1
Cdc6_C
(PF09079.10)
2qby 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
Export table
SCOP Domain Family PDB entries Number of structures
DNA-binding domain from NDT80
(b.2.5.7)
1mnn 2etw 2euv 2euw 2eux 2evf 2evg 2evh 2evi 2evj 10
Lambda integrase-like, catalytic core
(d.163.1.1)
1crx 1nzb 1ouq 1q3u 1q3v 2hoi 11
Paired domain
(a.4.1.5)
1pdn 6pax 2
MarR-like transcriptional regulators
(a.4.5.28)
1z9c 2
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1a02 1
Restriction endonuclease MunI
(c.52.1.8)
1d02 2
© NPIDB team 2003 - 2017

text