Interaction mode
Mode:  H-Bb H-Mj S-Bb L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
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SCOP Domain Family PDB entries Number of structures
Nucleosome core histones
(a.22.1.1)
1eqz 1f66 1id3 1kx4 1m18 1m19 1m1a 1p34 1p3a 1p3b 1p3f 1p3g 1p3i 1p3k 1p3l 1p3m 1p3o 1p3p 1s32 1u35 1zla 2cv5 2nqb 3b6g 3c1b 45
Lambda integrase-like, catalytic core
(d.163.1.1)
1kbu 1nzb 1ouq 1pvp 1pvq 1q3v 1xns 1xo0 2crx 2hof 3crx 4crx 14
Excisionase-like
(a.6.1.7)
1rh6 2ief 2og0 4
Interferon regulatory factor
(a.4.5.23)
2o6g 2pi0 3
Nuclear receptor
(g.39.1.2)
1ga5 1hlz 3
Replication initiation protein
(a.4.5.10)
1rep 1
ets domain
(a.4.5.21)
1yo5 1
PhoB-like
(a.4.6.1)
1gxp 2
MarR-like transcriptional regulators
(a.4.5.28)
1z9c 2
HNH-motif
(d.4.1.1)
1v14 1
Viral DNA-binding domain
(d.58.8.1)
1b3t 2
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