Interaction mode
Mode:  H-Bb H-Mj S-Bb S-Mj L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
zf-C4
(PF00105.17)
1a6y 4hn6 4nqa 4tnt 5cbx 5cby 5cbz 5cc0 5cc1 4hn5 4cn5 4cn3 1cit 1dsz 1kb2 1kb6 1r4r 2han 3g6r 4cn2 5krb 24
Penicillinase_R
(PF03965.15)
2p7c 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Arc/Mnt-like phage repressors
(a.43.1.1)
1bdt 1bdv 1par 8
Nuclear receptor
(g.39.1.2)
1a6y 1kb6 1r4r 3
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